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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTCCGTGCTCTCTTGGATGTTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatcttctgtttgttaccatgatattatattggtgtcattgtttgtatttagcccatcaagaataatcattttttcatgtgcttgctgtaagagtcatctcttgttgtggtgaacgatttcccatctctctagcccctttaacgtttgttgccgcag

Basic information

species Zea mays
transcript GRMZM2G163081_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G163081_T04 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os01g67126.1 (Oryza sativa), 5'ss of exon 6
CTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTCCGTGCTCTCTTGGATGTTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatat-atcttctgtttgttaccat--gatattatattggtgtcattgtttgtatttagcccatcaagaataatcattttttcatgtgcttg-ctgtaagagtcatctcttgttgtggtgaacgat-ttcccatctctctagcccctttaacgtttgttgccgcag
|| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||| || ||||| || || || |||||||||||||||||||||||||| | |  |  | || |    ||  |  | |  | || |  |    |  |||||   | |  ||||||    |     | ||| |    |    | || |   | | || | | | || ||| |  | ||   | |||    |    |    |  || || | ||||
CTATGTTGAACCAGCTGATGAAAGGAGGCCTTTCCGTGCTCTCTTGGATGTTGGCCTCATTAGGACAACCACTGGAAACCGTGTCTTTGGTGCCCTCAAGgtgtgttgtgctttgatctcaactgttggctgctgtaataatagt-tgatttgtcacttgaacatcaaattcatcagctcttttagaaacacaaccgtcaatataacctttggat-tgttgatctgtattagtagctcatgtggatatacttctcttctt-ctgcag

upper sequence: GRMZM2G163081_T04 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os01g67134.1 (Oryza sativa), 5'ss of exon 6
CTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTCCGTGCTCTCTTGGATGTTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatat-atcttctgtttgttaccat--gatattatattggtgtcattgtttgtatttagcccatcaagaataatcattttttcatgtgc-ttgctgtaagagtcatctcttgttgtggtgaacgat-ttcccatctc-tctagcccctttaacgtttgttgccgcag
|| |||||| ||||||||||| ||| ||||||||||||||||||||||||||||||| || ||||| || || || |||||||||||||||||||||||||| | |  |  | || | |  ||  |  | |  | || |  |    |  ||| |   | |  ||||||          | ||| |    |    | || |   | | || | | | || ||| |  | ||   | ||| | | |      |    |||  | | ||||
CTATGTTGAACCAGCTGATGAAAGGCGGCCTTTCCGTGCTCTCTTGGATGTTGGCCTCATTAGGACAACCACTGGAAACCGTGTCTTTGGTGCCCTCAAGgtgtgttgtgctttgatcgcaactgttggctgctgtaataatagt-tgatttatcacttgaacatcaaattcctcagctcttttagaaacacaaccgttacgataacctttggat-tgttgatctgtattagtagctcatgtggatatacttctcttttcttctgcag

upper sequence: GRMZM2G163081_T04 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA13G35580.2 (Glycine max), 5'ss of exon 6
CTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTCCGTGCTCTCTTGGATGTTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatcttctgtttgttaccatgatattatattggtgtcattgtttgtatttagcccatcaagaataatcattttttcatgtgcttgctgtaagagtcatctcttgttgtggtgaacgatttcccatctctctagcccctttaacgtttgttgccgcag
 || || || || || ||    |||||||| |||||||| ||| | |||||||| ||| | |||||||||||||| || || |||||||||||||| |||||| || |||  |  |      | || ||| || ||| | |  | ||     |  |  | |  ||   | ||  |||                                                                                     
TTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTCCGTGCACTCCTTGATGTTGGTCTTGTTAGGACTACAACAGGAAATCGCGTCTTTGGTGCCCTTAAGgta-atctctaatactgcaactcttggtatgattttgttttagtggtg---gtcaaatctaataattgtgatggtttacag---------------------------------------------------------------------------------

upper sequence: GRMZM2G163081_T04 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA07G06590.1 (Glycine max), 5'ss of exon 6
CTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTCCGTGCTCTCTTGGATGTTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatcttctgtttgttaccatgatattatattggtgtcattgtttgtatttagcccatcaagaataatcattttttcatgtgcttgctgtaagagtcatctcttgttgtggtgaacgatttcccatctctctagcccctttaacgtttgttgccgcag
 || || || || |||||    |||||||| |||||||||||| | |||||||| ||||| ||||||||||| || |||||||| ||||||||||| ||||||   ||||    |     ||  | || ||| ||  |||| ||| | | |   | |   ||||| | | |  | | | | || || || | |                                                                     
TTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTCCGTGCTCTCCTTGATGTTGGTCTTATTAGGACTACAACCGGTAACCGTGTGTTTGGTGCCCTTAAGgta---atctatcat-----actgtaatgtta-atcagtgtgattttgttttaatggttgatcaa-attgaataatctgtgat-tgtttacag---------------------------------------------------------------------

upper sequence: GRMZM2G163081_T04 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA07G06580.1 (Glycine max), 5'ss of exon 6
CTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTCCGTGCTCTCTTGGATGTTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatcttctgtttgttaccatgatattatattggtgtcattgtttgtatttagcccatcaagaataatcattttttcatgtgcttgctgtaagagtcatctcttgttgtggtgaacgatttcccatctctctagcccctttaacgtttgttgccgcag
 || || || || |||||    |||||||| |||||||||||| | |||||||| ||||| ||||||||||| || |||||||| ||||||||||| ||||||   ||||    |      |  | || ||| ||  |||| ||| ||| || |  |   ||||| | | |  | | | | || || || | |                                                                     
TTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTCCGTGCTCTCCTTGATGTTGGTCTTATTAGGACTACAACCGGTAACCGTGTGTTTGGTGCCCTTAAGgta---atctatcat-----gctgtaatgtta-atcagtgtgattttttttaat-ggttgatcaa-attgaataatctgtgat-tgtttacag---------------------------------------------------------------------

upper sequence: GRMZM2G163081_T04 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA16G03170.1 (Glycine max), 5'ss of exon 6
CTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTCCGTGCTCTCTTGGATGTTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatcttctgtttgttaccatgatattatattggtgtcattgtttgtatttagcccatcaagaataatcattttttcatgtgcttgctgtaagagtcatctcttgttgtggtgaacgatttcccatctctctagcccctttaacgtttgttgccgcag
 || || || || |||||    |||||||| |||||||||||| | |||||||| ||||| ||||||||||| || |||||||||||||||||||| ||||||   ||||    |     ||    ||  || |||||||| |||  |||| || |        | | | |  | ||||| || || || | |                                                                     
TTCAGTGGAACCTGCTGAGAGCAGGAGGCCATTCCGTGCTCTCCTTGATGTTGGTCTTATTAGGACTACAACTGGCAACCGTGTCTTTGGTGCCCTTAAGgta---atctatcat-----actgcaatgcta-attggtgtgatt--ttgttttaatggtgatcaaattgaataattttttat-tgtttacag---------------------------------------------------------------------

upper sequence: GRMZM2G163081_T04 (Zea mays), 5'ss of exon 6
lower sequence: AT5G39740.2 (Arabidopsis thaliana), 5'ss of exon 6
CTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTCCGTGCTCTCTTGGATGTTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatcttctgtttgttaccatgatattatattggtgtcattgtttgtatttagcccatcaagaataatcattttttcatgtgcttgctgtaagagtcatctcttgttgtggtgaacgatttcccatctctctagcccctttaacgtttgttgccgcag
 ||||| || ||| |||||   || || ||||||||||||||  | |||||||| |||||||||||||| || || |||||||| |||||||| ||||||||||        ||| | |||          || | | ||||  ||||  ||| |     ||  ||  |  ||||  ||| | |    ||||  |  | || | |  |    || ||      |||      || |||                        
TTCTGTGGAACCAACTGATTCCAGAAGACCTTTCCGTGCTCTTCTTGATGTTGGACTTATCAGGACTACCACTGGAAACCGTGTGTTTGGTGCACTCAAGgtat--------tgtgtttta----------atgtggttgtctgtgttcttatctgttgtat--agtgtgttcatgatttgaagatgatgct--agcaatcctttaataccctgttggtttgcttcatgaaactatag------------------------

upper sequence: GRMZM2G163081_T04 (Zea mays), 5'ss of exon 6
lower sequence: AT3G25520.1 (Arabidopsis thaliana), 5'ss of exon 5
CTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTCCGTGCTCTCTTGGATGTTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatcttctgtttgttaccatgatattatattggtgtcattgtttgtatttagcccatcaagaataatcattttttcatgtgcttgctgtaagagtcatctcttgttgtggtgaacgatttcccatctctctagcccctttaacgtttgttgccgcag
 || ||||||||| |||||   ||||| ||||||||||||||  | |||||||| ||||||||||| |||||||| |||||||| || ||||| || ||||||| || ||| | | | ||    || | | |     |||   || |||||  ||    | ||  ||  ||    || | |  |   || || ||| |  |   | ||| |  | ||   || |    |                                 
TTCCGTTGAGCCAACTGATTCAAGGAGACCTTTCCGTGCTCTTCTTGATGTTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAGgtat-taacttgtttctctttttttgttgtga-----gtgctcttatttgtcatt----cttcttgagcaaatgcttatactggcaatt-ctttaatatcc---ttttggttcgctgtttgaatctgtag--------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211405088|gb|FL248957.1|FL248957
EST:     TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAG                         GGAGCTTTGGATGGGGGCCTGGATATTCCTCACAGCGA
genomic: TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatct ... gttgccgcagGGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGA
EST: gi|21843275|gb|BQ703856.1|BQ703856
EST:     TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAG                         GGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAG
genomic: TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatct ... gttgccgcagGGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAG
EST: gi|211091884|gb|FL248715.1|FL248715
EST:     TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAG                         GGAGCATTGGATGGAGGCCTGGATATTCCTCA
genomic: TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatct ... gttgccgcagGGAGCATTGGATGGAGGCCTGGATATTCCTCA
EST: gi|28873893|gb|CB329822.1|CB329822
EST:     TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAG                         GGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTGCT
genomic: TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatct ... gttgccgcagGGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTGCT
EST: gi|9733019|gb|BE511771.1|BE511771
EST:     TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAG                         GGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTGCT
genomic: TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatct ... gttgccgcagGGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTGCT
EST: gi|6637084|gb|AW261356.1|AW261356
EST:     TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAG                         GGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGA
genomic: TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatct ... gttgccgcagGGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGA
EST: gi|32916161|gb|CF020973.1|CF020973
EST:     TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAG                         GGAGCTTTGGATGGGGGCCTGGATATT
genomic: TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatct ... gttgccgcagGGAGCATTGGATGGAGGCCTGGATATT
EST: gi|27575972|gb|CA998666.1|CA998666
EST:     TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAG                         GGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAG
genomic: TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatct ... gttgccgcagGGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAG
EST: gi|9952649|gb|BE639337.1|BE639337
EST:     TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAG                         GGAGCATTGGATGGAGGCCTGG
genomic: TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatct ... gttgccgcagGGAGCATTGGATGGAGGCCTGG
EST: gi|32936154|gb|CF040966.1|CF040966
EST:     TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAG                         GGAGCTTTGGATGGGGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTGCT
genomic: TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatct ... gttgccgcagGGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTGCT
EST: gi|211229326|gb|FL248882.1|FL248882
EST:     TTGGCCTTATCANGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAG                         GGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAAGTTTGCT
genomic: TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatct ... gttgccgcagGGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTGCT
EST: gi|211094368|gb|FL248741.1|FL248741
EST:     TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAG                         GGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTGCT
genomic: TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatct ... gttgccgcagGGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTGCT
EST: gi|29946592|gb|CB816227.1|CB816227
EST:     TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAG                         GGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTGCT
genomic: TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatct ... gttgccgcagGGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTGCT
EST: gi|21760119|gb|BQ635660.1|BQ635660
EST:     TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAG                         GGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTGCT
genomic: TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatct ... gttgccgcagGGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTGCT
EST: gi|9733561|gb|BE512313.1|BE512313
EST:     TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAG                         GGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAG
genomic: TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatct ... gttgccgcagGGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAG
EST: gi|20300169|gb|BQ163112.1|BQ163112
EST:     TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAG                         GGAGCTTTGGATGGGGGCCTGGATATTCCTCACAGCGAGAAG
genomic: TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatct ... gttgccgcagGGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAG
EST: gi|23199686|gb|BU582251.1|BU582251
EST:     TGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTTGGTGCCCTCAAG                         GGAGCATTTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTGC
genomic: TGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTT-GGTGCCCTCAAGgtatatatct ... gttgccgcagGGAGCATT-GGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTGC
EST: gi|211231398|gb|FL248903.1|FL248903
EST:     TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAG                         GGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTGCT
genomic: TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatct ... gttgccgcagGGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTGCT
EST: gi|211086975|gb|FL248692.1|FL248692
EST:     TGGCCTTATCAGGACTACNACAGGGAACCGTGTCTTTGGTGCCCCTCA-G                         GGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAAGTTTGC
genomic: TGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCC-TCAAGgtatatatct ... gttgccgcagGGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTGC
EST: gi|211223147|gb|FL248846.1|FL248846
EST:     TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAG                         GGAGCTTTGGATGGGGGCCTGGATATTCCTCA-AGCGAG
genomic: TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatct ... gttgccgcagGGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAG
EST: gi|5932750|gb|AW057111.1|AW057111
EST:     TTGGCCTTATCAGGACTACAACAGGGAACCGNGTCTTTGGTGCCCTCAAG                         GGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCAAGAAGAGGTTTGCT
genomic: TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatct ... gttgccgcagGGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTGCT
EST: gi|14191429|gb|BG833659.1|BG833659
EST:     TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAG                         GGAGCTTTGGATGGGGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTGCT
genomic: TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatct ... gttgccgcagGGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTGCT
EST: gi|211506017|gb|FL248602.1|FL248602
EST:     TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAG                         GGAGCTTTGGATGG
genomic: TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatct ... gttgccgcagGGAGCATTGGATGG
EST: gi|31998287|gb|CD662015.1|CD662015
EST:     TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAG                         GGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCG
genomic: TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatct ... gttgccgcagGGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCG
EST: gi|5566826|gb|AI881692.1|AI881692
EST:     TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAG                         GGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTGCT
genomic: TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatct ... gttgccgcagGGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTGCT
EST: gi|211397280|gb|FL248557.1|FL248557
EST:     TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAG                         GGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTGCT
genomic: TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatct ... gttgccgcagGGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTGCT
EST: gi|28930968|gb|CB334329.1|CB334329
EST:     TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAG                         GGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGTT-GCT
genomic: TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatct ... gttgccgcagGGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTGCT
EST: gi|23199627|gb|BU582192.1|BU582192
EST:     TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAG                         GGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTGCT
genomic: TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatct ... gttgccgcagGGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTGCT
EST: gi|22935874|gb|BU572149.1|BU572149
EST:     TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAG                         GGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTGCT
genomic: TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatct ... gttgccgcagGGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTGCT
EST: gi|31997736|gb|CD661748.1|CD661748
EST:     TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAG                         GGAGCATTGGATGGAG
genomic: TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatct ... gttgccgcagGGAGCATTGGATGGAG
EST: gi|28987232|gb|CB351529.1|CB351529
EST:     TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAG                         GGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAG
genomic: TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatct ... gttgccgcagGGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAG
EST: gi|211513114|gb|FL248650.1|FL248650
EST:     TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAG                         GGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTGCT
genomic: TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatct ... gttgccgcagGGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTGCT
EST: gi|22543214|gb|BU093652.1|BU093652
EST:     TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAG                         GGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGCTTGCT
genomic: TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatct ... gttgccgcagGGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTGCT
EST: gi|15499558|gb|BI596071.1|BI596071
EST:     TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAG                         GGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAG
genomic: TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatct ... gttgccgcagGGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAG
EST: gi|32914757|gb|CF019569.1|CF019569
EST:     TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAG                         GGAGCTTTGGATGGGGGCCTGGATAT
genomic: TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatct ... gttgccgcagGGAGCATTGGATGGAGGCCTGGATAT
EST: gi|26457482|gb|CA829065.1|CA829065
EST:     TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAG                         GGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTGCT
genomic: TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatct ... gttgccgcagGGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTGCT
EST: gi|211099322|gb|FL248771.1|FL248771
EST:     TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAG                         GGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAAGTTTGCT
genomic: TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatct ... gttgccgcagGGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTGCT
EST: gi|211233462|gb|FL248919.1|FL248919
EST:     ATGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAG                         GGAGCTTTGGATGGCGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTGCT
genomic: TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatct ... gttgccgcagGGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTGCT
EST: gi|211400006|gb|FL248933.1|FL248933
EST:     TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAG                         GGAGCATTGGATGGAGGCCTGGATATTC-TCACAGCGAGAAGAGGTTTGCT
genomic: TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatct ... gttgccgcagGGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTGCT
EST: gi|28568908|gb|CB280783.1|CB280783
EST:     TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTCGGTGCCCTCAAG                         GGAGCATCGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAG
genomic: TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatct ... gttgccgcagGGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAG
EST: gi|211503657|gb|FL248584.1|FL248584
EST:     TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAG                         GGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGTT
genomic: TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatct ... gttgccgcagGGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGTT
EST: gi|22520781|gb|BU079592.1|BU079592
EST:     TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAG                         GGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTGCT
genomic: TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatct ... gttgccgcagGGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTGCT
EST: gi|211233465|gb|FL248922.1|FL248922
EST:     TGGCCTTATCAGGACTACAACAGGGAACCGTGGTCTTTGGTGCCCTCAAG                         GGAGCATTGGGATGGGAGGCCTGGATATTCCTTCACAGCCGAGAAAAAGTT
genomic: TGGCCTTATCAGGACTACAACAGGGAACCGTG-TCTTTGGTGCCCTCAAGgtatatatct ... gttgccgcagGGAGCATTGG-ATGG-AGGCCTGGATATTCCT-CACAGC-GAGAAGAGGTT
EST: gi|211088637|gb|FL210925.1|FL210925
EST:     TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAG                         GGAGCATTGGATGGAGGCCTGGATATTCCTC
genomic: TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatct ... gttgccgcagGGAGCATTGGATGGAGGCCTGGATATTCCTC
EST: gi|26559987|gb|CA832222.1|CA832222
EST:     TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAG                         GGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTGCT
genomic: TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatct ... gttgccgcagGGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTGCT
EST: gi|15590404|gb|BI675020.1|BI675020
EST:     TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAG                         GGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTGCT
genomic: TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatct ... gttgccgcagGGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTGCT
EST: gi|211515467|gb|FL248662.1|FL248662
EST:     TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAG                         G-AGCATTGGATGGAGGCCTGGATATTC-TCACAGCGAGAAGAAGTTTGCT
genomic: TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatct ... gttgccgcagGGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTGCT
EST: gi|28987616|gb|CB351723.1|CB351723
EST:     TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAG                         GGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAA
genomic: TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatct ... gttgccgcagGGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAA
EST: gi|211031511|gb|FL245775.1|FL245775
EST:     TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAG                         GGAGCATTGGA
genomic: TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatct ... gttgccgcagGGAGCATTGGA
EST: gi|211316741|gb|FL245577.1|FL245577
EST:     TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAG                         GGAGCATTGGATGGA
genomic: TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatct ... gttgccgcagGGAGCATTGGATGGA
EST: gi|211410214|gb|FL248997.1|FL248997
EST:     GGCCTTATCAGGGACTACA-CAGGGAACCGTGTCTTTGGTGCCCCTCAAG                         G-AGCATTGGATGGGAGGC-TGGATATTCCTCACAGCGAGAAGAAGTTTG
genomic: GGCCTTATCAGG-ACTACAACAGGGAACCGTGTCTTTGGTGCCC-TCAAGgtatatatct ... gttgccgcagGGAGCATTGGATGG-AGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTG
EST: gi|15589564|gb|BI674180.1|BI674180
EST:     TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAG                         GGAGCATTGGATGGAGGCCTGG
genomic: TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatct ... gttgccgcagGGAGCATTGGATGGAGGCCTGG
EST: gi|211513117|gb|FL248653.1|FL248653
EST:     TGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCCTCA-G                         GGAGCATTGGATGGAGGCCTGNATATTCCTCACAGCGAGAAGAAGTTTGC
genomic: TGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCC-TCAAGgtatatatct ... gttgccgcagGGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTGC
EST: gi|32916225|gb|CF021037.1|CF021037
EST:     TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAG                         GGAGCTTTGGATGGGGGCCTGGATAT
genomic: TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatct ... gttgccgcagGGAGCATTGGATGGAGGCCTGGATAT
EST: gi|28909584|gb|CB330999.1|CB330999
EST:     TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAG                         GGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAG
genomic: TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatct ... gttgccgcagGGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAG
EST: gi|26457267|gb|CA828850.1|CA828850
EST:     TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAG                         GGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTGCT
genomic: TTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatct ... gttgccgcagGGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTGCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 4459

CTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTCCGTGCTCTCTTGGATGTTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatct ... gttgccgcagGGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTGCTGGATTCAAGAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 3273

CTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTCCGTGCTCTCTTGGATGTTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatct ... gttgccgcagGGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTGCTGGATTCAAGAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 2996

CTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTCCGTGCTCTCTTGGATGTTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatct ... gttgccgcagGGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTGCTGGATTCAAGAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1994

CTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTCCGTGCTCTCTTGGATGTTGGCCTTATCAGGACTACAACAGGGAACCGTGTCTTTGGTGCCCTCAAGgtatatatct ... gttgccgcagGGAGCATTGGATGGAGGCCTGGATATTCCTCACAGCGAGAAGAGGTTTGCTGGATTCAAGAAG