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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACACTTAATGACTGGTATGATCGAGACATTGATGCAATTAATGAGCCTTATCGGCCTATTCCATCAGGTGCTATATCAGAAAACGAGgtatgtctgtatttgagaaaaatgggaagcctttttggcatatgtgattatatgcatgcttagtttcatcaactattgactagtttgttggtactcgagt...

Basic information

species Zea mays
transcript GRMZM2G162672_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G162672_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os05g28200.1 (Oryza sativa), 5'ss of exon 6
ACACTTAATGACTGGTATGATCGAGACATTGATGCAATTAATGAGCCTTATCGGCCTATTCCATCAGGTGCTATATCAGAAAACGAGgtatgtctgtatttgagaaaaatgggaagcctttttggc--atatgtgattatatgcatgcttagtttcatcaactattgactagtttgttggtactcgagt-
||| |||| ||||||||||||||||| || ||||| || ||||| ||||| || |||||||| ||||| |||||||||||||| |||||||| |  |    |||     |        || |  ||  |||| |  | | |    || |||||||||||| ||| |||| | |   |        || | 
ACAATTAACGACTGGTATGATCGAGATATAGATGCGATAAATGAACCTTACCGTCCTATTCCTTCAGGCGCTATATCAGAAAATGAGgtatgccaatg---gagctttttcctttcttttctgtgctcatatttattcacagttttgtttagtttcatcagctaatgacaaatgactactctgctgattt

upper sequence: GRMZM2G162672_T02 (Zea mays), 5'ss of exon 6
lower sequence: AT3G51820.1 (Arabidopsis thaliana), 5'ss of exon 6
ACACTTAATGACTGGTATGATCGAGACATTGATGCAATTAATGAGCCTTATCGGCCTATTCCATCAGGTGCTATATCAGAAAACGAGgtatgtctgtatttgagaaaaatgggaagcctttttggcatatgtgattatatgcatgcttagtttcatcaactattgactagtttgttggtactcgagt
||| | || |||||||||||| |||| || || |||||||||||||| ||||| || |||||||| || || ||||||||    ||||||  |  |         || || |  ||| ||| |  | | ||||||| |       | |   | | | || |   |                      
ACAATCAACGACTGGTATGATAGAGATATCGACGCAATTAATGAGCCATATCGTCCAATTCCATCTGGAGCAATATCAGAGCCAGAGgtaactgag-----acagaacattgtgagcttttatctcttttgtgattctgatttctccttactccttaaaatgcag----------------------

upper sequence: GRMZM2G162672_T02 (Zea mays), 5'ss of exon 6
lower sequence: Vv08s0105g00590.t01 (Vitis vinifera), 5'ss of exon 6
ACACTTAATGACTGGTATGATCGAGACATTGATGCAATTAATGAGCCTTATCGGCCTATTCCATCAGGTGCTATATCAGAAAACGAGgtatgt------------ctgtatttgagaaaaatgggaagcctttttggcatatgtgattatatgcatgcttagtttcatcaactattgactagtttgttggtactcgagt
||||| ||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||| || ||||| ||||| |||||||||             || || | | | | ||| ||  |    |    || | |||| ||    |   ||    |  ||  |  ||   || |||||    |    || 
ACACTCAATGATTGGTATGATCGAGAGATTGATGCAATTAATGAACCTTATCGTCCTATTCCTTCAGGGGCAATATCCGAAAATGAGgtatgtaataatggctaattgcatgttatatatatgagagccaaaatcttgatttctgatgat---taccttttaccttgtcttcatttatttattttgtgaaaatctcag-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149038823|gb|EE155536.2|EE155536
EST:     TTAATGAGCCTTATCGGCCTATTCCATCAGGTGCTATATCAGAAAACGAG                         GTAATAACCCAGATCTGGGTGCTATTGCTAGGAGGGCTTGGATTGGGTGCT
genomic: TTAATGAGCCTTATCGGCCTATTCCATCAGGTGCTATATCAGAAAACGAGgtatgtctgt ... ttctcttcagGTAATAACCCAGATCTGGGTGCTATTGCTAGGAGGGCTTGGATTGGGTGCT
EST: gi|211379068|gb|FL028409.1|FL028409
EST:     TTAATGAGCCTTATCGGCCTATTCCATCAGGTGCTATATCAGAAAACGAG                         GTAATAACCCAGATCTGGGTGCTATTGCTAGGAGGGCTTGGATTGGGTGCT
genomic: TTAATGAGCCTTATCGGCCTATTCCATCAGGTGCTATATCAGAAAACGAGgtatgtctgt ... ttctcttcagGTAATAACCCAGATCTGGGTGCTATTGCTAGGAGGGCTTGGATTGGGTGCT
EST: gi|211302748|gb|FL028408.1|FL028408
EST:     TTAATGAGCCTTATCGGCCTATTCCATCAGGTGCTATATCAGAAAACGAG                         GTAATAACCCAGATCTGGGTGCTATTGCTAGGAGGGCTTGGATTGGGTGCT
genomic: TTAATGAGCCTTATCGGCCTATTCCATCAGGTGCTATATCAGAAAACGAGgtatgtctgt ... ttctcttcagGTAATAACCCAGATCTGGGTGCTATTGCTAGGAGGGCTTGGATTGGGTGCT
EST: gi|61119511|gb|DN560472.1|DN560472
EST:     TTAATGAGCCTTATCGGCCTATTCCATCAGGTGCTGTATCAGAAAACGAG                         GTAATAACCCAGATCTGGGTGCTATTGCTAGGAGGGCTTGGATTGGGTGCT
genomic: TTAATGAGCCTTATCGGCCTATTCCATCAGGTGCTATATCAGAAAACGAGgtatgtctgt ... ttctcttcagGTAATAACCCAGATCTGGGTGCTATTGCTAGGAGGGCTTGGATTGGGTGCT
EST: gi|78120047|gb|DV538431.1|DV538431
EST:     TTAATGAGCCTTATCGGCCTATTCCATCAGGTGCTATATCAGAAAACGAG                         GTAATAACCCAGATCTGGGTGCTATTGCTAGGAGGGCTTGGATTGGGTGCT
genomic: TTAATGAGCCTTATCGGCCTATTCCATCAGGTGCTATATCAGAAAACGAGgtatgtctgt ... ttctcttcagGTAATAACCCAGATCTGGGTGCTATTGCTAGGAGGGCTTGGATTGGGTGCT
EST: gi|211379069|gb|FL028410.1|FL028410
EST:     TTAATGAGCCTTATCGGCCTCTTCCATCAGGTGCTATATCAGAAAACGAG                         GTAATAACCCAGATCTGGGTGCTATTGCTAGGAGGGCTTGGATTGGGTGCT
genomic: TTAATGAGCCTTATCGGCCTATTCCATCAGGTGCTATATCAGAAAACGAGgtatgtctgt ... ttctcttcagGTAATAACCCAGATCTGGGTGCTATTGCTAGGAGGGCTTGGATTGGGTGCT
EST: gi|149080582|gb|EE169625.2|EE169625
EST:     TTAATGAGCCTTATCGGCCTATTCCATCAGGTGCTATATCAGAAAACGAG                         GTAATAACCCAGATCTGGGTGCTATTGCTAGGAGGGCTTGGATTGGGTGCT
genomic: TTAATGAGCCTTATCGGCCTATTCCATCAGGTGCTATATCAGAAAACGAGgtatgtctgt ... ttctcttcagGTAATAACCCAGATCTGGGTGCTATTGCTAGGAGGGCTTGGATTGGGTGCT