1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AAGCTTCAGATATGGTACTTGCAGATGATAACTTTAGTACTATAGTCGCAGCAGTTGGTGAAGGGAGATCTATTTACAACAACATGAAGGCTTTTATTAGgtctgtttttatataagttatgggcaaactttttaaaagggcaggcctggtgtagtggtgaaagctgggtctgcccttacaaactttcattgcatataattgttggttaaactaaaatatgtgttagctgtttgagtcatgtgtgctatgtgaactgcag
species | Zea mays |
transcript | GRMZM2G162426_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GCAGTTGGTGAAGGGAGATCTATTTACAACAACATGAAGGCTTTTATTAG ATATATGATCTCCTCAAACATCGGAGAGGTCGCGTCCATATTCCTGACATCEST: gi|71310554|gb|DR791572.1|DR791572
genomic: GCAGTTGGTGAAGGGAGATCTATTTACAACAACATGAAGGCTTTTATTAGgtctgttttt ... tgaactgcagATATATGATCTCCTCAAACATCGGAGAGGTCGCGTCCATATTCCTGACATC
EST: GCAGTTGGTGAAGGGAGATCTATTTACAACAACATGAAGGCTTTTATTAG ATATATGATCTCCTCAAACATCGGAGAGGTCGCGTCCATATTCCTGACATCEST: gi|17970149|gb|BM276914.1|BM276914
genomic: GCAGTTGGTGAAGGGAGATCTATTTACAACAACATGAAGGCTTTTATTAGgtctgttttt ... tgaactgcagATATATGATCTCCTCAAACATCGGAGAGGTCGCGTCCATATTCCTGACATC
EST: GCAGTTGGTGAAGGGAGATCTATTTACAACAACATGAAGGCTTTTATTAG ATATATGATCTCCTCAAACATCGGAGAGGTCGCGTCCATATTCCTGACATC
genomic: GCAGTTGGTGAAGGGAGATCTATTTACAACAACATGAAGGCTTTTATTAGgtctgttttt ... tgaactgcagATATATGATCTCCTCAAACATCGGAGAGGTCGCGTCCATATTCCTGACATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGCTTCAGATATGGTACTTGCAGATGATAACTTTAGTACTATAGTCGCAGCAGTTGGTGAAGGGAGATCTATTTACAACAACATGAAGGCTTTTATTAGgtctgtttttatataagttatgggcaaactttttaaaagggcaggcctggtgtagtggtgaaagctgggtctgcccttacaaactttcattgcatataattgttggttaaactaaaatatgtgttagctgtttgagtcatgtgtgctatgtgaactgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC