1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCTCTTCTGAAAAGAAAGTGGCATCAAAAGAAGATATACCATCTATTGACTTGAAAGGgtatgtctgcatctaggattttgtttgtttgcaccgcatcaaaagtgatgttagccataaaatcaaagcagggtagatgaagtggcgccaagcatctgac...
species | Zea mays |
transcript | GRMZM2G162409_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GAAAAGAAAGTGGCATCAAAAGAAGATATACCATCTATTGACTTGAAAGG GAGTTTTGATCTCACTGAAGCACTTAGGCTCCAGTTGGAACTTCAAAAGCGEST: gi|9742722|gb|BE518870.1|BE518870
genomic: GAAAAGAAAGTGGCATCAAAAGAAGATATACCATCTATTGACTTGAAAGGgtatgtctgc ... actactgcagGAGTTTTGATCTCACTGAAGCACTTAGGCTCCAGTTGGAACTTCAAAAGCG
EST: GAAAAGAAAGTGGCATCAAAAGAAGATATACCATCTATTGACTTGAAAGG GAGTTTTGATCTCACTGAAGCACTTAGGCTCCAGTTGGAACTTCAAAAGCGEST: gi|37386226|gb|CF630297.1|CF630297
genomic: GAAAAGAAAGTGGCATCAAAAGAAGATATACCATCTATTGACTTGAAAGGgtatgtctgc ... actactgcagGAGTTTTGATCTCACTGAAGCACTTAGGCTCCAGTTGGAACTTCAAAAGCG
EST: GATATACCATCTATTGAC-TGAAGGG GAGTTTAGATCTCACTGAAGCACTTAGGCTCCAGTTGGAACTTCAAAAGCGEST: gi|51592708|gb|CV071854.1|CV071854
genomic: GATATACCATCTATTGACTTGAAAGGgtatgtctgc ... actactgcagGAGTTTTGATCTCACTGAAGCACTTAGGCTCCAGTTGGAACTTCAAAAGCG
EST: GAAAAGAAAGTGGCATCAAAAGAAGATATACCATCTATTGACTTGAAAGG GAGTTTTGATCTCACTGAAGCACTTAGGCTTCAGTTGGAACTTCAAAAGCGEST: gi|211106908|gb|FK992455.1|FK992455
genomic: GAAAAGAAAGTGGCATCAAAAGAAGATATACCATCTATTGACTTGAAAGGgtatgtctgc ... actactgcagGAGTTTTGATCTCACTGAAGCACTTAGGCTCCAGTTGGAACTTCAAAAGCG
EST: GAAAAGAAAGTGGCATCAAAAGAAGATATACCATCTATTGACTTGAAAGG GAGTTTTGATCTCACTGAAGCACTTAGGCTCCAGTTGGAACTTCAAAAGCGEST: gi|13149966|gb|BG320288.1|BG320288
genomic: GAAAAGAAAGTGGCATCAAAAGAAGATATACCATCTATTGACTTGAAAGGgtatgtctgc ... actactgcagGAGTTTTGATCTCACTGAAGCACTTAGGCTCCAGTTGGAACTTCAAAAGCG
EST: GAAAAGAAAGTGGCATCAAAAGAAGATATACCATCTATTGACTTGAAAGG GAGTTTTGATCTCACTGAAGCACTTAGGCTCCAGTTGGAACTTCAAAAGCGEST: gi|71426491|gb|DR807541.1|DR807541
genomic: GAAAAGAAAGTGGCATCAAAAGAAGATATACCATCTATTGACTTGAAAGGgtatgtctgc ... actactgcagGAGTTTTGATCTCACTGAAGCACTTAGGCTCCAGTTGGAACTTCAAAAGCG
EST: GAAAAGAAAGTGGCATCAAAAGAAGATATACCATCTATTGACTTGAAAGG GAGTTTTGATCTCACTGAAGCACTTAGGCTCCAGTTGGAACTTCAAAAGCG
genomic: GAAAAGAAAGTGGCATCAAAAGAAGATATACCATCTATTGACTTGAAAGGgtatgtctgc ... actactgcagGAGTTTTGATCTCACTGAAGCACTTAGGCTCCAGTTGGAACTTCAAAAGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTCTTCTGAAAAGAAAGTGGCATCAAAAGAAGATATACCATCTATTGACTTGAAAGGgtatgtctgcatctaggattttgtttgtttgcaccgcatcaaaagtgatgttagccataaaatcaaagcagggtagatgaagtggcgccaagcatctgac
- - - - - AAAGAA
- - - - - AAGAAA
- - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - AAGAAG