1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CGAACCAGAACTCTTTCCTGGCCTTATCTATCGGATGAAACAACCAAAGATTGTTCTTTTAATTTTTGTTTCAGGCAAGATTGTTTTGACTGGAGCAAAGgttagtcgtcatttcttcttgcacatgcttaataataccgccatttgcttctcttttcccttcatttcatactccattgtttgtag
species | Zea mays |
transcript | GRMZM2G161418_T06 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTGTTCTTTTAATTTTTGTTTCAGGCAAGATTGTTTTGACTGGAGCAAAG GTGAGAGAGGAGACCTACACTGCCTTCGAAAACATCTATCCTGTACTGTCAEST: gi|8930534|gb|BE225298.1|BE225298
genomic: TTGTTCTTTTAATTTTTGTTTCAGGCAAGATTGTTTTGACTGGAGCAAAGgttagtcgtc ... ttgtttgtagGTGAGAGAGGAGACCTACACTGCCTTCGAAAACATCTATCCTGTACTGTCA
EST: TTTAATTTTTGTTTCAGGCAAGATTGTTTTGACTGGAGCAAAG GTGAGAGAGGAGACCTACACTGCCTTCGAAAACATCTATCCTGTACTGTCAEST: gi|166531265|gb|EG288612.1|EG288612
genomic: TTTAATTTTTGTTTCAGGCAAGATTGTTTTGACTGGAGCAAAGgttagtcgtc ... ttgtttgtagGTGAGAGAGGAGACCTACACTGCCTTCGAAAACATCTATCCTGTACTGTCA
EST: TTGTTCTTTTAATTTTTGTTTCAGGCAAGATTGTTTTGACTGGAGCAAAG GTGAGAGAGGAGEST: gi|32914682|gb|CF019494.1|CF019494
genomic: TTGTTCTTTTAATTTTTGTTTCAGGCAAGATTGTTTTGACTGGAGCAAAGgttagtcgtc ... ttgtttgtagGTGAGAGAGGAG
EST: TTGTTCTTTTAATTTTTGTTTCAGGCAAGATTGTTTTGACTGGAGCAAAG GTGAGGGAGGAGACCTACACTGCCTTTGAAAACATCTATCCTGTACTGTCAEST: gi|7137809|gb|AW499281.1|AW499281
genomic: TTGTTCTTTTAATTTTTGTTTCAGGCAAGATTGTTTTGACTGGAGCAAAGgttagtcgtc ... ttgtttgtagGTGAGAGAGGAGACCTACACTGCCTTCGAAAACATCTATCCTGTACTGTCA
EST: TTGTTCTTTTAATTTTTGTTTCAGGCAAGATTGTTTTGACTGGAGCAAAG GTGAGAGAGGAGACCTACACTGNNCCTTCGAAAACATCTATCCTGTACTGT
genomic: TTGTTCTTTTAATTTTTGTTTCAGGCAAGATTGTTTTGACTGGAGCAAAGgttagtcgtc ... ttgtttgtagGTGAGAGAGGAGACCTACACTG--CCTTCGAAAACATCTATCCTGTACTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAACCAGAACTCTTTCCTGGCCTTATCTATCGGATGAAACAACCAAAGATTGTTCTTTTAATTTTTGTTTCAGGCAAGATTGTTTTGACTGGAGCAAAGgttagtcgtcatttcttcttgcacatgcttaataataccgccatttgcttctcttttcccttcatttcatactccattgtttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG