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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAGAGGCTGTGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAGgtatatgaattttggaccttttatgattattcattagattataaaattgtcttctcacaaatgtgcacatttttttaatattctcag

Basic information

species Zea mays
transcript GRMZM2G161337_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G161337_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os03g15780.1 (Oryza sativa), 5'ss of exon 6
GCAAGAGGCTGTGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAGgtatatgaattttggaccttttatgattattcattagattataaaattgtcttctcacaaatgtgcacatttttttaatattctcag
||||||||||||||  |||| || |||||||| ||||||||||| || || || ||||||| | || |      ||  ||    |  |  || || || |   || |||| |||  ||  | ||   ||||  |   || ||||
GCAAGAGGCTGTGTCCTGGTAGCATCTAGTCCAGAAATTCTTACTCGTGTGAGGAAGgtatgtaaact------ctcctactgatgatagttggaatacattttt-tcttttcattaacattcatccttttaaatctttttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6021162|gb|AW066090.1|AW066090
EST:     GCTGTGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAG                         GGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACA
genomic: GCTGTGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAGgtatatgaat ... atattctcagGGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACA
EST: gi|60401378|gb|DN234185.1|DN234185
EST:     GCTGTGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAG                         GGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACA
genomic: GCTGTGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAGgtatatgaat ... atattctcagGGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACA
EST: gi|33099478|gb|CF059438.1|CF059438
EST:     GCTGTGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAG                         GGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACA
genomic: GCTGTGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAGgtatatgaat ... atattctcagGGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACA
EST: gi|31364516|gb|CD448871.1|CD448871
EST:     GCTGTGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAG                         GGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACA
genomic: GCTGTGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAGgtatatgaat ... atattctcagGGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACA
EST: gi|5901211|gb|AW042311.1|AW042311
EST:     GCTGTGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAG                         GGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACA
genomic: GCTGTGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAGgtatatgaat ... atattctcagGGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACA
EST: gi|60400588|gb|DN233395.1|DN233395
EST:     GCTGTGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAG                         GGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACA
genomic: GCTGTGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAGgtatatgaat ... atattctcagGGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACA
EST: gi|116816802|gb|EC859574.1|EC859574
EST:     GCTGTGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAG                         GGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACA
genomic: GCTGTGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAGgtatatgaat ... atattctcagGGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACA
EST: gi|33093179|gb|CF053173.1|CF053173
EST:     GCTGTGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAG                         GGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACA
genomic: GCTGTGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAGgtatatgaat ... atattctcagGGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACA
EST: gi|71448131|gb|DR829181.1|DR829181
EST:     GCTGTGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAG                         GGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACA
genomic: GCTGTGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAGgtatatgaat ... atattctcagGGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACA
EST: gi|7238168|gb|AW573390.1|AW573390
EST:     GCTGNGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAG                         GGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACA
genomic: GCTGTGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAGgtatatgaat ... atattctcagGGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACA
EST: gi|211345789|gb|FL266262.1|FL266262
EST:     GCTGTGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAG                         GGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACA
genomic: GCTGTGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAGgtatatgaat ... atattctcagGGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACA
EST: gi|32836931|gb|CD976609.1|CD976609
EST:     GCTGTGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAG                         GGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACA
genomic: GCTGTGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAGgtatatgaat ... atattctcagGGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACA
EST: gi|67024314|gb|CO453063.1|CO453063
EST:     GCTGTGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAG                         GGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACA
genomic: GCTGTGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAGgtatatgaat ... atattctcagGGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACA
EST: gi|211282582|gb|FL175928.1|FL175928
EST:     GCTGTGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAG                         GGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACA
genomic: GCTGTGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAGgtatatgaat ... atattctcagGGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACA