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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCACTTGTATCTGGTGCGGCATTAGGCTTAGAAGGGCAGgtaggcatctttcttgccaaagatattgcacccttttgcttcaccatattcttacattcattcattgtcttctctaacag

Basic information

species Zea mays
transcript GRMZM2G160842_T03
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60352218|gb|DN219191.1|DN219191
EST:     GGCTTAGAAGGGCAG                         TTGACTGTTTATCATCATAATGGAAGCCCATGCTATCGGTGCCTCTTTCCA
genomic: GGCTTAGAAGGGCAGgtaggcatct ... tctctaacagTTGACTGTTTATCATCATAATGGAAGCCCATGCTATCGGTGCCTCTTTCCA
EST: gi|78106504|gb|DV524922.1|DV524922
EST:     CCACTTGTATCTGGTGCGGCATTAGGCTTAGAAGGGCAG                         TTGACTGTTTATCATCATAATGGAAGCCCATGCTATCGGTGCCTCTTTCCA
genomic: CCACTTGTATCTGGTGCGGCATTAGGCTTAGAAGGGCAGgtaggcatct ... tctctaacagTTGACTGTTTATCATCATAATGGAAGCCCATGCTATCGGTGCCTCTTTCCA