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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTGGTCACTGCAAGCATCTTGCTCCGgttagtagagtattagcttgaaaatttccaaattattgcagcggtcttcattttttttgtggactgaacatgtacttaaatttag

Basic information

species Zea mays
transcript GRMZM2G159369_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G159369_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os05g06430.1 (Oryza sativa), 5'ss of exon 6
GTGTGGTCACTGCAAGCATCTTGCTCCGgttagtagagtat-----tagcttgaaaatttccaaattattgca--gcggtcttcattttttttgtggact-gaacatgtacttaaatttag
||||||||||||||||||||||||||||||||||||   |      ||  ||| ||| || |||| || ||||  |   | ||  | |||| | |  |||  ||| || ||||   |||||
GTGTGGTCACTGCAAGCATCTTGCTCCGgttagtagtacacctcagtattttgcaaagttgcaaaataatgcattgtcatttttctattttgtctaaactcaaacttgcacttgt-tttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22819386|gb|BU499476.1|BU499476
EST:     GTGTGGTCACTGCAAGCATCTTGCTCCG                         ATTTATGAGAAGCTGGCTTCAG
genomic: GTGTGGTCACTGCAAGCATCTTGCTCCGgttagtagag ... ttaaatttagATTTATGAGAAGCTGGCTTCAG
EST: gi|148935523|gb|EC879564.2|EC879564
EST:     GTGTGGTCACTGCAAGCATCTTGCTCCG                         ATTTATGAGAAGCTGGCTTCAGTTTTCAAGCAGGACGACGGTGTTGTGATT
genomic: GTGTGGTCACTGCAAGCATCTTGCTCCGgttagtagag ... ttaaatttagATTTATGAGAAGCTGGCTTCAGTTTTCAAGCAGGACGACGGTGTTGTGATT
EST: gi|24763723|gb|CA398894.1|CA398894
EST:     GTGTGGTCACTGCAAGCATCTTGCTCCG                         ATTTATGAGAAGCTGGCTTCAGTTTTCAAGCAGGACGACGGTGTTGTGATT
genomic: GTGTGGTCACTGCAAGCATCTTGCTCCGgttagtagag ... ttaaatttagATTTATGAGAAGCTGGCTTCAGTTTTCAAGCAGGACGACGGTGTTGTGATT
EST: gi|32837026|gb|CD976704.1|CD976704
EST:     GTGTGGTCACTGCAAGCATCTTGCTCCG                         ATTTATGAGAAGCTGGCTTCAGTTTTCAAGCAGGACGACGGTGTTGTGATT
genomic: GTGTGGTCACTGCAAGCATCTTGCTCCGgttagtagag ... ttaaatttagATTTATGAGAAGCTGGCTTCAGTTTTCAAGCAGGACGACGGTGTTGTGATT
EST: gi|21891538|gb|BQ744751.1|BQ744751
EST:     GTGTGGTCACTGCAAGCATCTTGCTCCG                         ATTTATGAGAAGCTGGCTTCAGTTTTCAAGCAGGACGACGGTGTTGTGATT
genomic: GTGTGGTCACTGCAAGCATCTTGCTCCGgttagtagag ... ttaaatttagATTTATGAGAAGCTGGCTTCAGTTTTCAAGCAGGACGACGGTGTTGTGATT
EST: gi|32858375|gb|CD998056.1|CD998056
EST:     GTGTGGTCACTGCAAGCATCTTGCTCCG                         ATTTATGAGAAGCTGGCTTCAGTTTTCAAGCAGGACGAC
genomic: GTGTGGTCACTGCAAGCATCTTGCTCCGgttagtagag ... ttaaatttagATTTATGAGAAGCTGGCTTCAGTTTTCAAGCAGGACGAC
EST: gi|9254368|gb|BE344836.1|BE344836
EST:     GTGTGGTCACTGCAAGCATCTTGCTCCG                         ATTTATGAGAAGCTGGCTTCAGTTTTCAAGCAGGACGACGGTGTTGTGATT
genomic: GTGTGGTCACTGCAAGCATCTTGCTCCGgttagtagag ... ttaaatttagATTTATGAGAAGCTGGCTTCAGTTTTCAAGCAGGACGACGGTGTTGTGATT
EST: gi|88755206|gb|DY539347.1|DY539347
EST:     GTGTGGTCACTGCAAGCATCTTGCTCCG                         ATTTATGAGAAGCTGGCTTCAGTTTTTCAAGCAG
genomic: GTGTGGTCACTGCAAGCATCTTGCTCCGgttagtagag ... ttaaatttagATTTATGAGAAGCTGGCTTCAGTTTT-CAAGCAG
EST: gi|111145784|gb|EE258169.1|EE258169
EST:     GTGTGGTCACTGCAAGCATCTTTGCTCCG                         ATTTATGAGAAAGCTGGCTTCAGTTTTCAAGCAAGACG
genomic: GTGTGGTCACTGCAAGCATCTT-GCTCCGgttagtagag ... ttaaatttagATTTATGAGAA-GCTGGCTTCAGTTTTCAAGCAGGACG
EST: gi|33285626|gb|CF075421.1|CF075421
EST:     GTGTGGTCACTGCAAGCATCTTGCTCCG                         ATTTATGAGAAGCTGGCTTCAGTTTTCANGCAGGACGACGGTGTTGTGATT
genomic: GTGTGGTCACTGCAAGCATCTTGCTCCGgttagtagag ... ttaaatttagATTTATGAGAAGCTGGCTTCAGTTTTCAAGCAGGACGACGGTGTTGTGATT
EST: gi|211334955|gb|FK966344.1|FK966344
EST:     GTGTGGTCACTGCAAGCATCTTGCTCCG                         ATTTATGAGAAGCTGGCTTCAGTTTTCA-GCAGGACGACGGGTGT-GTGAT
genomic: GTGTGGTCACTGCAAGCATCTTGCTCCGgttagtagag ... ttaaatttagATTTATGAGAAGCTGGCTTCAGTTTTCAAGCAGGACGACGG-TGTTGTGAT
EST: gi|31360143|gb|CD444500.1|CD444500
EST:     GTGTGGTCACTGCAAGCATCTTGCTCCG                         ATTTATGAGAAGCTGGCTTCAGTTTTCAAGCAGGAC
genomic: GTGTGGTCACTGCAAGCATCTTGCTCCGgttagtagag ... ttaaatttagATTTATGAGAAGCTGGCTTCAGTTTTCAAGCAGGAC
EST: gi|20507142|gb|BQ279504.1|BQ279504
EST:     GTGTGGTCACTGCAAGCATCTTGCTCCG                         ATTTATGAGAAGCTGGCTTCAGTTTTCAAGCAGGACGACGGTGTTGTGATT
genomic: GTGTGGTCACTGCAAGCATCTTGCTCCGgttagtagag ... ttaaatttagATTTATGAGAAGCTGGCTTCAGTTTTCAAGCAGGACGACGGTGTTGTGATT
EST: gi|26457090|gb|CA828673.1|CA828673
EST:     GTGTGGTCACTGCAAGCATCTTGCTCCG                         ATTTATGAGAAGCTGGC
genomic: GTGTGGTCACTGCAAGCATCTTGCTCCGgttagtagag ... ttaaatttagATTTATGAGAAGCTGGC
EST: gi|6994161|gb|AW453375.1|AW453375
EST:     GTGTGGTCACTGCAAGCATCTTGCTCCG                         ATTTATGAGAAGCTGGCTTCAGTTTTCAAGCAGGACGACGGTGTTGTGATT
genomic: GTGTGGTCACTGCAAGCATCTTGCTCCGgttagtagag ... ttaaatttagATTTATGAGAAGCTGGCTTCAGTTTTCAAGCAGGACGACGGTGTTGTGATT
EST: gi|32864543|gb|CF004225.1|CF004225
EST:     GTGTGGTCACTGCAAGCATCTTGCTCCG                         ATTTATGAGAAGCTGGCTTCAGTTNTCAAGCAGGACGACGGTGTTGTGATT
genomic: GTGTGGTCACTGCAAGCATCTTGCTCCGgttagtagag ... ttaaatttagATTTATGAGAAGCTGGCTTCAGTTTTCAAGCAGGACGACGGTGTTGTGATT
EST: gi|22935460|gb|BU571735.1|BU571735
EST:     GTGTGGTCACTGCAAGCATCTTGCTCCG                         ATTTATGAGAAGCTGGCTTCAGTTTTCAAGCAGGACGACGGTGTTGTGATT
genomic: GTGTGGTCACTGCAAGCATCTTGCTCCGgttagtagag ... ttaaatttagATTTATGAGAAGCTGGCTTCAGTTTTCAAGCAGGACGACGGTGTTGTGATT
EST: gi|211001445|gb|FL439450.1|FL439450
EST:     GTGTGGTCACTGCAAGCATCTTGCTCCG                         ATTTATGAGAAGCTGGCTTCAGTTTTCAAGCAGGACGACGGTGTTGTGATT
genomic: GTGTGGTCACTGCAAGCATCTTGCTCCGgttagtagag ... ttaaatttagATTTATGAGAAGCTGGCTTCAGTTTTCAAGCAGGACGACGGTGTTGTGATT