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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACAAGAAATAAATGATGAGTTGGAGTTTCTAATTATAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAGgttagtttgtgatatacatctttgacctatttagaggtgcaatcatgcagatatcaatttattgcgctttcttcatgaacatctgctggagtaattctaa...

Basic information

species Zea mays
transcript GRMZM2G158818_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G158818_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os05g50970.1 (Oryza sativa), 5'ss of exon 8
GAACAAGAAATAAATGATGAGTTGGAGTTTCTAATTATAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAGgttagtttgtgatatacatctttgacctatttagaggtgcaatcatgcagatatcaatttattgcgctttcttcatgaa-catctgctggagtaattctaa-----------
|||||||||||| ||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||  |     |||| |  | |   ||||||||||   ||       ||| ||  ||||  | | | ||||||  ||    |   |   ||| ||           
GAACAAGAAATAGATGATGAATTGGAGTTTCTGATTTTAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAGgttagtttgcta-----atctatagcttccctagaggtgcagaaat-------tcatttgtttgcattatatacatgaaatatactttattgggcttcaaagattggatttg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71770125|gb|DR968062.1|DR968062
EST:     AGTTTCTAATTATAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAG                         GACGCTGTTTCACTTGTGAAGATGGAGGAGGATCCTGAGGCAGCAGCCCGG
genomic: AGTTTCTAATTATAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAGgttagtttgt ... gttcccacagGACGCTGTTTCACTTGTGAAGATGGAGGAGGATCCTGAGGCAGCAGCCCGG
EST: gi|20301082|gb|BQ164025.1|BQ164025
EST:     AGTTTCTAATTATAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAG                         GACGCTGTTTCACTTGTGAAGATGGAGG
genomic: AGTTTCTAATTATAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAGgttagtttgt ... gttcccacagGACGCTGTTTCACTTGTGAAGATGGAGG
EST: gi|211312460|gb|FL459524.1|FL459524
EST:     AGTTTCTAATTATAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAG                         GACGCTGTTTCACTTGTGAAGATGGAGGAGGATCCTGAGGCAGCAGCCCGG
genomic: AGTTTCTAATTATAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAGgttagtttgt ... gttcccacagGACGCTGTTTCACTTGTGAAGATGGAGGAGGATCCTGAGGCAGCAGCCCGG
EST: gi|78024801|gb|DV493188.1|DV493188
EST:     TTATAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAG                         GACGCTGTTTCACTTGTGAAGATGGAGGAGGATCCTGAGGCAGCAGCCCGG
genomic: TTATAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAGgttagtttgt ... gttcccacagGACGCTGTTTCACTTGTGAAGATGGAGGAGGATCCTGAGGCAGCAGCCCGG
EST: gi|149098862|gb|EE184875.2|EE184875
EST:     AGTTTCTAATTATAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAG                         GACGCTGTTTCACTTGTGAAGATGGAGGAGGATCCTGAGGCAGCAGCCCGG
genomic: AGTTTCTAATTATAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAGgttagtttgt ... gttcccacagGACGCTGTTTCACTTGTGAAGATGGAGGAGGATCCTGAGGCAGCAGCCCGG
EST: gi|211050684|gb|FL481891.1|FL481891
EST:     AGTTTCTAATTATAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAG                         GACGCTGTTTCACTTGTGAAGATGGAGGAGGATCCTGAGGCAGCAGCCCGG
genomic: AGTTTCTAATTATAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAGgttagtttgt ... gttcccacagGACGCTGTTTCACTTGTGAAGATGGAGGAGGATCCTGAGGCAGCAGCCCGG
EST: gi|67022511|gb|CO451260.1|CO451260
EST:     AGTTTCTAATTATAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAG                         GACGCTGTTTCACTTGTGAAGATGGAGGAGGATCCTGAGGCAGCAGCCCGG
genomic: AGTTTCTAATTATAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAGgttagtttgt ... gttcccacagGACGCTGTTTCACTTGTGAAGATGGAGGAGGATCCTGAGGCAGCAGCCCGG
EST: gi|211331038|gb|FL445937.1|FL445937
EST:     AGTTTCTAATTATAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAG                         GACGCTGTTTCACTTGTGAAGATGGAGGAGGATCCTGAGGCAGCAGCCCGG
genomic: AGTTTCTAATTATAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAGgttagtttgt ... gttcccacagGACGCTGTTTCACTTGTGAAGATGGAGGAGGATCCTGAGGCAGCAGCCCGG
EST: gi|4804314|gb|AI666180.1|AI666180
EST:     ATGGGCTGTGGGATGTGGTTCCGAATGAG                         GACGCTGTTTCACTTGTGAAGATGGAGGAGGATCCTGAGGCAGCAGCCCGG
genomic: ATGGGCTGTGGGATGTGGTTCCGAATGAGgttagtttgt ... gttcccacagGACGCTGTTTCACTTGTGAAGATGGAGGAGGATCCTGAGGCAGCAGCCCGG
EST: gi|32795938|gb|CD948174.1|CD948174
EST:     AGTTTCTAATTATAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAG                         GACGCTGTTTCACTTGTGAAGATGGAGGAGGATC
genomic: AGTTTCTAATTATAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAGgttagtttgt ... gttcccacagGACGCTGTTTCACTTGTGAAGATGGAGGAGGATC
EST: gi|9733204|gb|BE511956.1|BE511956
EST:     AGTTTCTAATTATAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAG                         GACGCTGTTTCACTTGTGAAGATGGAGGAGGATCCTGAGGCAGCAGCCCGG
genomic: AGTTTCTAATTATAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAGgttagtttgt ... gttcccacagGACGCTGTTTCACTTGTGAAGATGGAGGAGGATCCTGAGGCAGCAGCCCGG
EST: gi|101388859|gb|EB816411.1|EB816411
EST:     AGTTTCTAATTATAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAG                         GACGCTGTTTCACTTGTGAAGATGGAGGAGGATCCTGAGGCAGCAGCCCGG
genomic: AGTTTCTAATTATAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAGgttagtttgt ... gttcccacagGACGCTGTTTCACTTGTGAAGATGGAGGAGGATCCTGAGGCAGCAGCCCGG
EST: gi|19058198|gb|BM736865.1|BM736865
EST:     AGTTTCTAATTATAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAG                         GACGCTGTTTCACTTGTGAAGATGGAGG
genomic: AGTTTCTAATTATAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAGgttagtttgt ... gttcccacagGACGCTGTTTCACTTGTGAAGATGGAGG
EST: gi|211345077|gb|FL234318.1|FL234318
EST:     AGTTTCTAATTATAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAG                         GACGCTGTTTCACTTGTGAAGATGGAGGAGGATCCTGAGGCAGCAGCCCGG
genomic: AGTTTCTAATTATAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAGgttagtttgt ... gttcccacagGACGCTGTTTCACTTGTGAAGATGGAGGAGGATCCTGAGGCAGCAGCCCGG
EST: gi|20300882|gb|BQ163825.1|BQ163825
EST:     AGTTTCTAATTATAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAG                         GACGCTGTTTCACTTGTGAAGATGGAGG
genomic: AGTTTCTAATTATAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAGgttagtttgt ... gttcccacagGACGCTGTTTCACTTGTGAAGATGGAGG
EST: gi|211018239|gb|FL446511.1|FL446511
EST:     AGTTTCTAATTATAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAG                         GACGCTGTTTCACTTGTGAAGATGGAGGAGGATCCTGAGGCAGCAGCCCGG
genomic: AGTTTCTAATTATAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAGgttagtttgt ... gttcccacagGACGCTGTTTCACTTGTGAAGATGGAGGAGGATCCTGAGGCAGCAGCCCGG
EST: gi|9961513|gb|BE644301.1|BE644301
EST:     AGTTTCTAATTATAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAG                         GACGCTGTTTCACTTGTGAAGATGGAGGAGGATCCTGAGGCAGCAGCCCGG
genomic: AGTTTCTAATTATAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAGgttagtttgt ... gttcccacagGACGCTGTTTCACTTGTGAAGATGGAGGAGGATCCTGAGGCAGCAGCCCGG
EST: gi|211342699|gb|FL234316.1|FL234316
EST:     AGTTTCTAATTATAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAG                         GACGCTGTTTCACTTGTGAAGATGGAGGAGGATCCTGAGGCAGCAGCCCGG
genomic: AGTTTCTAATTATAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAGgttagtttgt ... gttcccacagGACGCTGTTTCACTTGTGAAGATGGAGGAGGATCCTGAGGCAGCAGCCCGG
EST: gi|40336649|gb|CK370719.1|CK370719
EST:     GGGCTGTGGGATGTGGTTCCGAATGAG                         GACGCTGTTTCACTTGTGAAGATGGAGGAGGATCCTGAGGCAGCAGCCCGG
genomic: GGGCTGTGGGATGTGGTTCCGAATGAGgttagtttgt ... gttcccacagGACGCTGTTTCACTTGTGAAGATGGAGGAGGATCCTGAGGCAGCAGCCCGG
EST: gi|61119350|gb|DN560311.1|DN560311
EST:     AGTTTCTAATTATAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAG                         GACGCTGTTTCACTTGTGAAGATGGAGGAGGATCCTGAGGCAGCAGCCCGG
genomic: AGTTTCTAATTATAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAGgttagtttgt ... gttcccacagGACGCTGTTTCACTTGTGAAGATGGAGGAGGATCCTGAGGCAGCAGCCCGG