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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGTGCTGTTGATGTGAAGAAAATGGAAGTTTCCCACTGGAGCAAGAAGGTCCATCTTGGCTCCCCAGTCACCTCCATTGAATTTTGTCCTAGTGAAAGgtaactacagcttggcactgtatagtttggtagttcactggataccttttctttttaatcttgcctggcagcttattgcagaggttaagccaggcgtgat...

Basic information

species Zea mays
transcript GRMZM2G158489_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G158489_T03 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os07g09000.1 (Oryza sativa), 5'ss of exon 8
TCTGTGCTGTTGATGTGAAGAAAATGGAAGTTTCCCACTGGAGCAAGAAGGTCCATCTTGGCTCCCCAGTCACCTCCATTGAATTTTGTCCTAGTGAAAGgtaactacagcttggcactgtatagtttggtagttcactggataccttttctttttaatctt--gcctg--gcagcttattgcagaggttaagccaggcgtgat--
|||||||||| ||||| ||||| ||||| ||||| |||||||||||||||||||||||||| || || ||  |||| |||||||||||||||| ||||||||| ||  | ||     ||||| || | |   ||| |    ||      |||| |  || |   |  ||  | |   |  ||  |   | |   |  |   | |  
TCTGTGCTGTGGATGTAAAGAAGATGGATGTTTCTCACTGGAGCAAGAAGGTCCATCTTGGTTCTCCGGTTTCCTCAATTGAATTTTGTCCTACTGAAAGgta-ctggaact-----ctgtaaagatggcatgtttatcacatcttgaatcttatggatttctagtttgttgtacactgctgttgtactgatttctagtaaggtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149105792|gb|EE291382.2|EE291382
EST:     GTCCATCTTGGCTCCCCAGTCACCTCCATTGAATTTTGTCCTAGTGAAAG                         GGTTGTAATCTCCACATCACATCAGTGGGGAGCAGAGCTCACGAAACTGAA
genomic: GTCCATCTTGGCTCCCCAGTCACCTCCATTGAATTTTGTCCTAGTGAAAGgtaactacag ... ggtatcgcagGGTTGTAATCTCCACATCACATCAGTGGGGAGCAGAGCTCACGAAACTGAA
EST: gi|211501284|gb|FL248092.1|FL248092
EST:     GTCCATCTTGGCTCCCCAGTCACCTCCATTGAATTTTGTCCTACTGAAAG                         GGTTGTAATCTCCACATCACATCAGTGGGGAGCAGAGCTCACGAAACTGAA
genomic: GTCCATCTTGGCTCCCCAGTCACCTCCATTGAATTTTGTCCTAGTGAAAGgtaactacag ... ggtatcgcagGGTTGTAATCTCCACATCACATCAGTGGGGAGCAGAGCTCACGAAACTGAA
EST: gi|71308208|gb|DR790336.1|DR790336
EST:     GTCCATCTTGGCTCCCCAGTCACCTCCATTGAATTTTGTCCTAGTGAAAG                         GGTTGTAATCTCCACATCACATCAGTGGGGAGCAGAGCTCACGAAACTGAA
genomic: GTCCATCTTGGCTCCCCAGTCACCTCCATTGAATTTTGTCCTAGTGAAAGgtaactacag ... ggtatcgcagGGTTGTAATCTCCACATCACATCAGTGGGGAGCAGAGCTCACGAAACTGAA
EST: gi|32837118|gb|CD976796.1|CD976796
EST:     GTCCATCTTGGCTCCCCAGTCACCTCCATTGAATTTTGTCCTAGTGAAAG                         GGTTGTAATCTCCACATCACATCAGTGGGGAGCAGAGCTCACGAAACTGAA
genomic: GTCCATCTTGGCTCCCCAGTCACCTCCATTGAATTTTGTCCTAGTGAAAGgtaactacag ... ggtatcgcagGGTTGTAATCTCCACATCACATCAGTGGGGAGCAGAGCTCACGAAACTGAA
EST: gi|76010774|gb|DT937944.1|DT937944
EST:     GTCCATCTTGGCTCCCCAGTCACCTCCATTGAATTTTGTCCTAGTGAAAG                         GGTTGTAATCTCCACATCACATCAGTGGGGAGCAGAGCTCACGAAACTGAA
genomic: GTCCATCTTGGCTCCCCAGTCACCTCCATTGAATTTTGTCCTAGTGAAAGgtaactacag ... ggtatcgcagGGTTGTAATCTCCACATCACATCAGTGGGGAGCAGAGCTCACGAAACTGAA
EST: gi|89251668|gb|DY623454.1|DY623454
EST:     TCTTGGCTCCCCAGTCCCCTCCATTGAATTTTGTCCTAGTGAAAG                         GGTTGTAATTTCCCCATCCCATCAGTGGGGGGCGGAGCTCACGAAACTGAA
genomic: TCTTGGCTCCCCAGTCACCTCCATTGAATTTTGTCCTAGTGAAAGgtaactacag ... ggtatcgcagGGTTGTAATCTCCACATCACATCAGTGGGGAGCAGAGCTCACGAAACTGAA
EST: gi|89760375|gb|DY688809.1|DY688809
EST:     GTCCATCTTGGCTCCCCAGTCACCTCCATTGAATTTTGTCCTAGTGAAAG                         GGTTGTAATCTCCACATCACATCAGTGGGGAGCGGAGCTCACGAAACTGAA
genomic: GTCCATCTTGGCTCCCCAGTCACCTCCATTGAATTTTGTCCTAGTGAAAGgtaactacag ... ggtatcgcagGGTTGTAATCTCCACATCACATCAGTGGGGAGCAGAGCTCACGAAACTGAA
EST: gi|211501285|gb|FL248093.1|FL248093
EST:     GTCCATCTTGGCTCCCCAGTCACCTCCATTGAATTTTGTCCTAGTGAAAG                         GGTTGTAATCTCCACATCACATCAGTGGGGAGCAGAGCTCACGAAACTGAA
genomic: GTCCATCTTGGCTCCCCAGTCACCTCCATTGAATTTTGTCCTAGTGAAAGgtaactacag ... ggtatcgcagGGTTGTAATCTCCACATCACATCAGTGGGGAGCAGAGCTCACGAAACTGAA
EST: gi|78079988|gb|DV508400.1|DV508400
EST:     GTCCATCTTGGCTCCCCAGTCACCTCCATTGAATTTTGTCCTAGTGAAAG                         GGTTGTAATCTCCACATCACATCAGTGGGGAGCAGAGCTCACGAAACTGAA
genomic: GTCCATCTTGGCTCCCCAGTCACCTCCATTGAATTTTGTCCTAGTGAAAGgtaactacag ... ggtatcgcagGGTTGTAATCTCCACATCACATCAGTGGGGAGCAGAGCTCACGAAACTGAA
EST: gi|6021240|gb|AW066168.1|AW066168
EST:     GTCCATCTTGGCTCCCCAGTCACCTCCATTGAATTTTGTCCTAGTGAAAG                         GGTTGTAATCTCCACATCACATCAGTGGGGAGCAGAGCTCACGAAACTGAA
genomic: GTCCATCTTGGCTCCCCAGTCACCTCCATTGAATTTTGTCCTAGTGAAAGgtaactacag ... ggtatcgcagGGTTGTAATCTCCACATCACATCAGTGGGGAGCAGAGCTCACGAAACTGAA
EST: gi|211411697|gb|FL434955.1|FL434955
EST:     CTCCATTGAATTTTGTCCTACTGAAAG                         GGTTGTAATCTCCACATCACATCAGTGGGGAGCACAGCTCACGAAACTGAA
genomic: CTCCATTGAATTTTGTCCTAGTGAAAGgtaactacag ... ggtatcgcagGGTTGTAATCTCCACATCACATCAGTGGGGAGCAGAGCTCACGAAACTGAA
EST: gi|93017687|gb|EB643207.1|EB643207
EST:     GTCCATCTTGGCTCCCCAGTCACCTCCATTGAATTTTGTCCTAGTGAAAG                         GGTTGTAATCTCCACATCACATCAGTGGGGAGCAGAGCTCACGAAACTGAA
genomic: GTCCATCTTGGCTCCCCAGTCACCTCCATTGAATTTTGTCCTAGTGAAAGgtaactacag ... ggtatcgcagGGTTGTAATCTCCACATCACATCAGTGGGGAGCAGAGCTCACGAAACTGAA
EST: gi|86474634|gb|DY241004.1|DY241004
EST:     GTCCATCTTGGCTCCCCAGTCACCTCCATTGAATTTTGTCCTAGTGAAAG                         GGTTGTAATCTCCACATCACATCAGTGGGGAGCAGAGCTCACGAAACTGAA
genomic: GTCCATCTTGGCTCCCCAGTCACCTCCATTGAATTTTGTCCTAGTGAAAGgtaactacag ... ggtatcgcagGGTTGTAATCTCCACATCACATCAGTGGGGAGCAGAGCTCACGAAACTGAA
EST: gi|78115282|gb|DV533670.1|DV533670
EST:     GTCCATCTTGGCTCCCCAGTCACCTCCATTGAATTTTGTCCTAGTGAAAG                         GGTTGTAATCTCCACATCACATCAGTGGGGAGCAGAGCTCACGAAACTGAA
genomic: GTCCATCTTGGCTCCCCAGTCACCTCCATTGAATTTTGTCCTAGTGAAAGgtaactacag ... ggtatcgcagGGTTGTAATCTCCACATCACATCAGTGGGGAGCAGAGCTCACGAAACTGAA
EST: gi|76287602|gb|DV027170.1|DV027170
EST:     GTCCATCTTGGCTCCCCAGTCACCTCCATTGAATTTTGTCCTAGTGAAAG                         GGTTGTAATCTCCACATCACATCAGTGGGGAGCAGAGCTCACGAAACTGAA
genomic: GTCCATCTTGGCTCCCCAGTCACCTCCATTGAATTTTGTCCTAGTGAAAGgtaactacag ... ggtatcgcagGGTTGTAATCTCCACATCACATCAGTGGGGAGCAGAGCTCACGAAACTGAA
EST: gi|71596195|gb|DR906946.1|DR906946
EST:     GTCCATCTTGGCTCCCCAGTCACCTCCATTGAATTTTGTCCTAGTGAAAG                         GGTTGTAATCTCCACATCACATCAGTGGGGAGCAGAGCTCACGAAACTGAA
genomic: GTCCATCTTGGCTCCCCAGTCACCTCCATTGAATTTTGTCCTAGTGAAAGgtaactacag ... ggtatcgcagGGTTGTAATCTCCACATCACATCAGTGGGGAGCAGAGCTCACGAAACTGAA
EST: gi|16921161|gb|BM075014.1|BM075014
EST:     GTCCATCTTGGCTCCCCAGTCACCTCCATTGAATTTTGTCCTAGTGAAAG                         GGTTGTAATCTCCACATCACATCAGTGGGGAGCAGAGCTCACGAAACTGAA
genomic: GTCCATCTTGGCTCCCCAGTCACCTCCATTGAATTTTGTCCTAGTGAAAGgtaactacag ... ggtatcgcagGGTTGTAATCTCCACATCACATCAGTGGGGAGCAGAGCTCACGAAACTGAA
EST: gi|91053037|gb|EB163455.1|EB163455
EST:     GTCCATCTTGGCTCCCCAGTCACCTCCATTGAATTTTGTCTTAGTGAAAG                         GGTTGTAATCTCCACATCACATCAGTGGGGAGCAGAGCTCACGAAACTGAA
genomic: GTCCATCTTGGCTCCCCAGTCACCTCCATTGAATTTTGTCCTAGTGAAAGgtaactacag ... ggtatcgcagGGTTGTAATCTCCACATCACATCAGTGGGGAGCAGAGCTCACGAAACTGAA
EST: gi|74237401|gb|DT645315.1|DT645315
EST:     GTCCATCTTGGCTCCCCAGTCACCTCCATTGAATTTTGTCCTAGTGAAAG                         GGTTGTAATCTCCACATCACATCAGTGGGGAGCAGAGCTCACGAAACTGAA
genomic: GTCCATCTTGGCTCCCCAGTCACCTCCATTGAATTTTGTCCTAGTGAAAGgtaactacag ... ggtatcgcagGGTTGTAATCTCCACATCACATCAGTGGGGAGCAGAGCTCACGAAACTGAA
EST: gi|50329947|gb|CO525073.1|CO525073
EST:     GTCCATCTTGGCTCCCCAGTCACCTCCATTGAATTTTGTCCTAGTGAAAG                         GGTTGTAATCTCCACATCACATCAGTGGGGAGCAGAGCTCACGAAACTGAA
genomic: GTCCATCTTGGCTCCCCAGTCACCTCCATTGAATTTTGTCCTAGTGAAAGgtaactacag ... ggtatcgcagGGTTGTAATCTCCACATCACATCAGTGGGGAGCAGAGCTCACGAAACTGAA
EST: gi|86470686|gb|DY237056.1|DY237056
EST:     GTCCATCTTGGCTCCCCAGTCACCTCCATTGAATTTTGTCCTAGTGAAAG                         GGTTGTAATCTCCACATCACATCAGTGGGGAGCAGAGCTCACGAAACTGAA
genomic: GTCCATCTTGGCTCCCCAGTCACCTCCATTGAATTTTGTCCTAGTGAAAGgtaactacag ... ggtatcgcagGGTTGTAATCTCCACATCACATCAGTGGGGAGCAGAGCTCACGAAACTGAA
EST: gi|74236583|gb|DT644497.1|DT644497
EST:     GTCCATCTTGGCTCCCCAGTCACCTCCATTGAATTTTGTCCTAGTGAAAG                         GGTTGTAATCTCCACATCACATCAGTGGGGAGCAGAGCTCACGAAACTGAA
genomic: GTCCATCTTGGCTCCCCAGTCACCTCCATTGAATTTTGTCCTAGTGAAAGgtaactacag ... ggtatcgcagGGTTGTAATCTCCACATCACATCAGTGGGGAGCAGAGCTCACGAAACTGAA
EST: gi|211115136|gb|FL479369.1|FL479369
EST:     GTCCATCTTGGCTCCCCAGTCACCTCCATTGAATTTTGTCCTACTGAAAG                         GGTTGTAATCTCCACATCACATCAGTGGGGAGCAGAGCTCACGAAACTGAA
genomic: GTCCATCTTGGCTCCCCAGTCACCTCCATTGAATTTTGTCCTAGTGAAAGgtaactacag ... ggtatcgcagGGTTGTAATCTCCACATCACATCAGTGGGGAGCAGAGCTCACGAAACTGAA
EST: gi|88748364|gb|DY532505.1|DY532505
EST:     GTCCATCTTGGCTCCCCAGTCACCTCCATTGAATTTTGTCCTAGTGAAAG                         GGTTGTAATCTCCACATCACATCAGTGGGGAGCAGAGCTCACGAAACTGAA
genomic: GTCCATCTTGGCTCCCCAGTCACCTCCATTGAATTTTGTCCTAGTGAAAGgtaactacag ... ggtatcgcagGGTTGTAATCTCCACATCACATCAGTGGGGAGCAGAGCTCACGAAACTGAA
EST: gi|32938162|gb|CF042981.1|CF042981
EST:     GACCATCTTGGCTCCCCAGTCACCTCCATTGAATTTTGTCCTAGGGAAAG                         GGTTGTAATCTCCACATCACATCAGTGGGGAGCAGAGCTCACGAAACTGAA
genomic: GTCCATCTTGGCTCCCCAGTCACCTCCATTGAATTTTGTCCTAGTGAAAGgtaactacag ... ggtatcgcagGGTTGTAATCTCCACATCACATCAGTGGGGAGCAGAGCTCACGAAACTGAA
EST: gi|6445478|gb|AW179396.1|AW179396
EST:     GTCCATCTTGGCTCCCCAGTCACCTCCATTGAATTTTGTCCTAGTGAAAG                         GGTTGTAATCTCCACATCACATCAGTGGGGAGCAGAGCTCACGAAACTGAA
genomic: GTCCATCTTGGCTCCCCAGTCACCTCCATTGAATTTTGTCCTAGTGAAAGgtaactacag ... ggtatcgcagGGTTGTAATCTCCACATCACATCAGTGGGGAGCAGAGCTCACGAAACTGAA
EST: gi|76020754|gb|DT947924.1|DT947924
EST:     GTCCATCTTGGCTCCCCAGTCACCTCCATTGAATTTTGTCCTAGTGAAAG                         GGTTGTAATCTCCACATCACATCAGTGGGGAGCAGAGCTCACGAAACTGAA
genomic: GTCCATCTTGGCTCCCCAGTCACCTCCATTGAATTTTGTCCTAGTGAAAGgtaactacag ... ggtatcgcagGGTTGTAATCTCCACATCACATCAGTGGGGAGCAGAGCTCACGAAACTGAA