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TTTCAGTTTAGGTTTTGGCCAAATAATAACAGCAGAATGTATGTCTTGGAGGGTGTTACACCATGCATACAATCATTGCAATTACAAGCTGGCGATACAGgtaattagcaatttagcatctatttgcaagcatgcattcacttctttcttgattgaagtttgtttttaatactacgtatatggtatagctacttattatt...
species | Zea mays |
transcript | GRMZM2G158162_T03 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GGGTGTTACACCATGCATACAATCATTGCAATTACAAGCTGGCGATACAG TGACCTTTAGTCGTATAGATCCTGGAGGGAAACTTGTTATGGGCTTTCGGAEST: gi|67034443|gb|CO462993.1|CO462993
genomic: GGGTGTTACACCATGCATACAATCATTGCAATTACAAGCTGGCGATACAGgtaattagca ... ttttctgcagTGACCTTTAGTCGTATAGATCCTGGAGGGAAACTTGTTATGGGCTTTCGGA
EST: GGGTGTTACACCATGCATACAATCATTGCAATTACAAGCTGGCGATACAG TGACCTTTAGTCGTATAGATCCTGGAGGGAAACTTGTTATGGGCTTTCGGAEST: gi|67040653|gb|CO466908.1|CO466908
genomic: GGGTGTTACACCATGCATACAATCATTGCAATTACAAGCTGGCGATACAGgtaattagca ... ttttctgcagTGACCTTTAGTCGTATAGATCCTGGAGGGAAACTTGTTATGGGCTTTCGGA
EST: GTGTTACACCATGCATANCA-TCATTGCAAATTACA-GCTGGCGATACAG TGACCTTTAGTCGTATAGATCCTGGNAGG-AAACTTGTTATGGGCTTTCG-EST: gi|13150757|gb|BG321079.1|BG321079
genomic: GTGTTACACCATGCATA-CAATCATTGCAA-TTACAAGCTGGCGATACAGgtaattagca ... ttttctgcagTGACCTTTAGTCGTATAGATCCTGG-AGGGAAACTTGTTATGGGCTTTCGG
EST: GGGTGTTACACCATGCATACAATCATTGCAATTACAAGCTGGCGATACAG TGACCTTTAGTCGTATAGATCCTGGAGGGAAACTTGTTATGGGCTTTCGGA
genomic: GGGTGTTACACCATGCATACAATCATTGCAATTACAAGCTGGCGATACAGgtaattagca ... ttttctgcagTGACCTTTAGTCGTATAGATCCTGGAGGGAAACTTGTTATGGGCTTTCGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTCAGTTTAGGTTTTGGCCAAATAATAACAGCAGAATGTATGTCTTGGAGGGTGTTACACCATGCATACAATCATTGCAATTACAAGCTGGCGATACAGgtaattagcaatttagcatctatttgcaagcatgcattcacttctttcttgattgaagtttgtttttaatactacgtatatggtatagctacttattatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG