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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATATAGCTAGCGAACACCCTGAGAGATTTTTTGTTGGTGAAATAGTGAGGGAAAAGATTTTTGTTCAGTACAGGCAGGAAATTCCTTATTCATGCCAGgtatatccttttgtgttttcctcatccgtttaatgcagcatgctctccattttgctagcctttatttattttgattcttttttttggtggggtgacag

Basic information

species Zea mays
transcript GRMZM2G158024_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G158024_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os05g49220.2 (Oryza sativa), 5'ss of exon 6
GATATAGCTAGCGAACACCCTGAGAGATTTTTTGTTGGTGAAATAGTGAGGGAAAAGATTTTTGTTCAGTACAGGCAGGAAATTCCTTATTCATGCCAGgtatatccttttgtgttttc-ctcatccgtttaatgcagcatgctctccattttgctagcctttatttattttgattcttt-tttttggtggggtgacag
|| |||||||| || |||||||||||||||||||| || ||||||||||| |||||||||||| |||||||  | || |||||||| ||| | || |||||||||| | | ||| || | |  |||  |||  ||| ||||  |      | ||| ||| | | |    | ||   |||| ||| ||   |        
GACATAGCTAGTGAGCACCCTGAGAGATTTTTTGTGGGGGAAATAGTGAGAGAAAAGATTTTTCTTCAGTATCGTCAAGAAATTCCATATGCTTGTCAGgtatatcttctggtgcttgcacctatcaattttgtgcggcatttt------tctgccagcatgtgtcagatgtgcgactttgtttatgacag--------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149086133|gb|EE175673.2|EE175673
EST:     GGGAAAAGATTTTTGTTCAGTACAGGCAGGAAATTCCTTATTCATGCCAG                         GTTAATGTTGTCAGTTACAAAAGTCGGCCTGCTGCCAAGGACTTCATTCAA
genomic: GGGAAAAGATTTTTGTTCAGTACAGGCAGGAAATTCCTTATTCATGCCAGgtatatcctt ... ggggtgacagGTTAATGTTGTCAGTTACAAAAGTCGGCCTGCTGCCAAGGACTTCATTCAA
EST: gi|211086607|gb|FL455573.1|FL455573
EST:     GGGAAAAGATTTTTGTTCAGTACAGGCAGGAAATTCCTTATTCATGCCAG                         GTTAATGTTGTCAGTTACAAAAGTCGGCCTGCTGCCAAGGACTTCATTCAA
genomic: GGGAAAAGATTTTTGTTCAGTACAGGCAGGAAATTCCTTATTCATGCCAGgtatatcctt ... ggggtgacagGTTAATGTTGTCAGTTACAAAAGTCGGCCTGCTGCCAAGGACTTCATTCAA
EST: gi|101398846|gb|EB821295.1|EB821295
EST:     GGGAAAAGATTTTTGTTCAGTACAGGCAGGAAATTCCTTATTCATGCCAG                         GTTAATGTTGTCAGTTACAAAAGTCGGCCTGCTGCCAAGGACTTCATTCAA
genomic: GGGAAAAGATTTTTGTTCAGTACAGGCAGGAAATTCCTTATTCATGCCAGgtatatcctt ... ggggtgacagGTTAATGTTGTCAGTTACAAAAGTCGGCCTGCTGCCAAGGACTTCATTCAA