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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATCCGAATTGCCAGGATTTTCAACACCTATGGGCCTAGGATGAACATTGATGATGGTCGTGTTGTTAGCAACTTCATTGCTCAGGCTGTGCGgtaatgctttgttgaatgtcttttattttctcctcagctactgcagatagattggcggctaatcttttcacaatctttag

Basic information

species Zea mays
transcript GRMZM2G157772_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G157772_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os03g16980.3 (Oryza sativa), 5'ss of exon 8
AAATCCGAATTGCCAGGATTTTCAACACCTATGGGCCTAGGATGAACATTGATGATGGTCGTGTTGTTAGCAACTTCATTGCTCAGGCTGTGCGgtaatgctttgttgaatgtcttttattttctcctcagctactg--cagatagattggcggctaatcttttcaca-atctttag--
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || ||||||||||  | ||||  ||||| |   |   ||||| |  ||  ||| | |    |  ||| || ||   ||| |  ||||   
AGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTGATGATGGGCGTGTTGTTAGTAACTTCATTGCTCAGGCCGTACGgtaatgctc-gctgaacttctttcaacattctctcaggttgtgtccagttggtcctggagcttattttcatacataattttacag

upper sequence: GRMZM2G157772_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os03g16980.5 (Oryza sativa), 5'ss of exon 9
AAATCCGAATTGCCAGGATTTTCAACACCTATGGGCCTAGGATGAACATTGATGATGGTCGTGTTGTTAGCAACTTCATTGCTCAGGCTGTGCGgtaatgctttgttgaatgtcttttattttctcctcagctactg--cagatagattggcggctaatcttttcacaatctttag
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || ||||||||||  | ||||  ||||| |   |   ||||| |  ||  ||| | |    |  ||| || ||   |          
AGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTGATGATGGGCGTGTTgttagtaacttcattgctcaggccgtacggtaatgctc-gctgaacttctttcaacattctctcaggttgtgtccagttggtcctggagcttattttcata----------

upper sequence: GRMZM2G157772_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA15G04500.1 (Glycine max), 5'ss of exon 10
AAATCCGAATTGCCAGGATTTTCAACACCTATGGGCCTAGGATGAACATTGATGATGGTCGTGTTGTTAGCAACTTCATTGCTCAGGCTGTGCGgtaat-gctttgttga-atgtcttttattttctcctcagctactgcagatagattggcggctaatcttttcacaatctttag--------------------
|||| || ||||| || || || ||||| ||||| ||  | ||||| ||||||||||| |||||||| ||||||||||||||||| ||  |||||||||  ||||  ||  || |  ||||  | |     |  || ||  | ||  |  ||   |  | |||  | |   | |                      
AAATACGCATTGCAAGAATCTTTAACACATATGGACCACGCATGAATATTGATGATGGGCGTGTTGTCAGCAACTTCATTGCTCAAGCACTGCGgtaattactttactgttatctggtttaaatgcatgcta--taatgttgttacttctgcatgtcttttttatatatattctgatggttttggttgtcagaagg

upper sequence: GRMZM2G157772_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA11G15010.1 (Glycine max), 5'ss of exon 9
AAATCCGAATTGCCAGGATTTTCAACACCTATGGGCCTAGGATGAACATTGATGATGGTCGTGTTGTTAGCAACTTCATTGCTCAGGCTGTGCGgtaa-tgctttgttgaatgtcttttattttctcctcagctactgcagatagattggcggctaat-cttttcacaatctttag-------------------
|||| || ||||| || || |||||||| ||||| ||  | ||||| ||||||||||| |||||||| || |||||||||||||| ||  | |||||| | ||||     |    | ||||   |      | || ||| |||| || |     |||  ||||  |  ||||  |                    
AAATACGCATTGCGAGAATCTTCAACACATATGGACCACGCATGAATATTGATGATGGGCGTGTTGTCAGTAACTTCATTGCTCAAGCAATTCGgtaaatcctttaacttaataatgttataggcaagatggata-tgctgataaatagttttttaagactttatattatctcaactctcaagaaacattgatgc

upper sequence: GRMZM2G157772_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA13G40960.1 (Glycine max), 5'ss of exon 10
AAATCCGAATTGCCAGGATTTTCAACACCTATGGGCCTAGGATGAACATTGATGATGGTCGTGTTGTTAGCAACTTCATTGCTCAGGCTGTGCGgtaatgctttgttgaatgtcttttattttctcctcagctactgcagatagattggcggctaatcttttcacaatctttag---------------------
|||| || ||||| || || || ||||| ||||| ||  | ||||| ||||||||||| |||||||||||||||||||||||||| ||  | |||||||   |||     | |||  | ||    | |    || ||  | ||  |  |    |  | |||| | | |||   |                     
AAATACGCATTGCAAGAATCTTTAACACATATGGACCACGCATGAATATTGATGATGGGCGTGTTGTTAGCAACTTCATTGCTCAAGCACTTCGgtaattacttgactgttatctggttttaatgcatgctataatgttgttacttctgtatatc-tattttgatattctgatggttttgattgccagaaggatc

upper sequence: GRMZM2G157772_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA11G15020.1 (Glycine max), 5'ss of exon 9
AAATCCGAATTGCCAGGATTTTCAACACCTATGGGCCTAGGATGAACATTGATGATGGTCGTGTTGTTAGCAACTTCATTGCTCAGGCTGTGCGgtaat----gctttgttgaatgt----cttttattttctcctcagctactgcagatagat-tggcggctaatcttttcacaat--ctttag---------
|||| ||  |||| || || || ||||| ||||||||  | ||||| ||||||||||| |||||||| ||||||||||||||||| ||  | |||||||     | || || | | |     || ||| || | ||    |  |     ||  |     |  | |||| || |  ||   ||| |         
AAATACGTGTTGCAAGAATCTTTAACACATATGGGCCACGCATGAATATTGATGATGGACGTGTTGTCAGCAACTTCATTGCTCAAGCGATTCGgtaattaaaacatttttcagtttgtagtttatatgttgtactgtagtgttatttctatgtgccttgtttgatctgttaatgatggtttttgattgctgca

upper sequence: GRMZM2G157772_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA12G06990.1 (Glycine max), 5'ss of exon 9
AAATCCGAATTGCCAGGATTTTCAACACCTATGGGCCTAGGATGAACATTGATGATGGTCGTGTTGTTAGCAACTTCATTGCTCAGGCTGTGCGgtaat----gctttgttgaatgtct--tttattttctcctcagctactgcagatagattggc---ggctaatcttttcacaat--ctttag---------
|||| ||  |||| || || || ||||| ||||||||  | ||||| ||||||||||| |||||||| ||||||||||||||||| ||  | |||||||    || || || | | | |  ||||| | ||   | |       |  |  |   ||   |  | |||| || |  ||   ||| |         
AAATACGTGTTGCAAGAATCTTTAACACATATGGGCCGCGCATGAATATTGATGATGGACGTGTTGTCAGCAACTTCATTGCTCAAGCAATTCGgtaattaaagcatttttcagtttgtagtttatatgctgtactgtagtgttatttctacgtgccttgtttgatctgttaatgatggtttttgattgccaca

upper sequence: GRMZM2G157772_T02 (Zea mays), 5'ss of exon 5
lower sequence: AT3G46440.1 (Arabidopsis thaliana), 5'ss of exon 8
AAATCCGAATTGCCAGGATTTTCAACACCTATGGGCCTAGGATGAACATTGATGATGGTCGTGTTGTTAGCAACTTCATTGCTCAGGCTGTGCGgtaa--tgctttgttgaatgt------cttttattttctcctcagctactgcagatagat---tggcggctaatcttttcac-aatctttag
||||||| ||||| || || |||||||| ||||| ||  | |||||||| |||||||| |||||||| |||||||||||||| || ||  | |||| |    ||||| | |||        |   | || | | |  |||||      |   ||   | |    |  |||| |||  |||  ||||
AAATCCGCATTGCTAGAATCTTCAACACTTATGGTCCACGCATGAACATCGATGATGGCCGTGTTGTAAGCAACTTCATTGCACAAGCACTCCGgtgagcctctttgctcaatccaacgaacaaattttattttccgagctataaattactcatctcttgttattgttcttgtcatgaatacttag

upper sequence: GRMZM2G157772_T02 (Zea mays), 5'ss of exon 5
lower sequence: AT2G28760.3 (Arabidopsis thaliana), 5'ss of exon 7
AAATCCGAATTGCCAGGATTTTCAACACCTATGGGCCTAGGATGAACATTGATGATGGTCGTGTTGTTAGCAACTTCATTGCTCAGGCTGTGCGgtaatgct-------------ttgttgaatgtcttttattttctcctcagctactgcagatagattggcggctaatcttttcacaatctttag------------------------------------------------
| || || || || ||||| |||||||| ||||| ||| | |||||||||||||||||||| ||||| ||||||||||||||||||||| |  ||| |  ||             || |||||| | | || |||| |  |    | ||  | | | || | ||  |||| ||    | |    |||                                                
AGATACGCATAGCGAGGATATTCAACACATATGGTCCTCGTATGAACATTGATGATGGTCGCGTTGTGAGCAACTTCATTGCTCAGGCTCTCAGgtgaaactaatctccatcaagttcttgaatttatcttttttttttttttttttcttgaaa-aaatagccgagtaattttgagtcgaatcctagactaattctaaagcctttttgtttgataaaattgttttgggtttgcag

upper sequence: GRMZM2G157772_T02 (Zea mays), 5'ss of exon 5
lower sequence: AT5G59290.2 (Arabidopsis thaliana), 5'ss of exon 8
AAATCCGAATTGCCAGGATTTTCAACACCTATGGGCCTAGGATGAACATTGATGATGGTCGTGTTGTTAGCAACTTCATTGCTCAGGCTGTGCGgtaatgctttgttgaatgtcttttattttctcctcagctactgcagatagattggcggctaatc---ttttcac--aatctttag---
||||||| ||||| || || |||||||| ||||| ||| | |||||||| |||||||| |||||||| ||||||||||||||||| ||  | |||||| |  |  ||   | |||   | ||  |    | | | |   | |  ||    |  ||      ||| ||   ||| | | |   
AAATCCGCATTGCTAGAATCTTCAACACATATGGTCCTCGAATGAACATCGATGATGGGCGTGTTGTGAGCAACTTCATTGCTCAAGCACTCCGgtaaag--tcattagctctctca-acttcattgaaaccaagttttgtttcatctctgcttagctgtgtttccattaaatgtgttgtag

upper sequence: GRMZM2G157772_T02 (Zea mays), 5'ss of exon 5
lower sequence: Vv13s0019g00840.t01 (Vitis vinifera), 5'ss of exon 9
AAATCCGAATTGCCAGGATTTTCAACACCTATGGGCCTAGGATGAACATTGATGATGGTCGTGTTGTTAGCAACTTCATTGCTCAGGCTGTGCGgtaatgctt----tgttgaatgtc----ttttattttctcct-ca-gctactgcagatagattggcggctaatct--tttcacaatctttag--------
| || || ||||||||||| ||||| || ||||| ||  | ||||| |||||||| || |||||||| ||||| ||||||||||| ||  | |||||||  ||    | |||||        ||||||| | | || || |||    |   ||  || || |||  |||    ||||   |  ||         
AGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatctttattattttgaaaactagcattttattattttctacatgctttacccattattttagctgcttctctaccctcactgccaataaaataagta

upper sequence: GRMZM2G157772_T02 (Zea mays), 5'ss of exon 5
lower sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 9
AAATCCGAATTGCCAGGATTTTCAACACCTATGGGCCTAGGATGAACATTGATGATGGTCGTGTTGTTAGCAACTTCATTGCTCAGGCTGTGCGgtaatgctttgttgaatgtcttttattttctcctcagctactgcagatag-attggcggctaatc----ttttcacaatctttag------------------
|||| || ||||| || ||||||||||| ||||||||  | ||||| ||||||||||| |||||||| ||||| ||||| ||||| ||  | |||||   | || |  | |     |||  |  |  |||  |     || ||  |||  |   |||||    |||    ||| |  |                   
AAATACGCATTGCTAGAATTTTCAACACATATGGGCCCCGCATGAATATTGATGATGGACGTGTTGTCAGCAATTTCATAGCTCAAGCACTTCGgtatgtccttatgtagt---ccttagctgttgatcatatttgtaagctactattttcatttaatcatgctttgtttaatttccaagatgacatccactgaact

upper sequence: GRMZM2G157772_T02 (Zea mays), 5'ss of exon 5
lower sequence: EFJ17446 (Selaginella moellendorffii), 5'ss of exon 8
AAATCCGAATTGCCAGGATTTTCAACACCTATGGGCCTAGGATGAACATTGATGATGGTCGTGTTGTTAGCAACTTCATTGCTCAGGCTGTGCGgtaatgctttgttgaatgtcttttattttctcctcagctactgcagatagattggcggctaatcttttcacaatctttag
| ||  | || ||  | ||||||||||| || |||||  ||||||| || || ||||| || || ||||||||||||||||| || ||| |  |||| ||||   |   |  |   |    | ||    |       |||                                  
AGATAAGGATCGCTCGCATTTTCAACACTTACGGGCCCCGGATGAATATCGACGATGGACGGGTCGTTAGCAACTTCATTGCCCAAGCTCTAAGgta-tgctgcatgcgaaatggatgtcctgctgtataatcttgacag----------------------------------