1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TCTTTTATCTTCTTGGAAGCGCTCCCTTATTCCTGGTATATTTGGTCTGGTTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaacatcacttttccagcttgtattttagtactgttaatatttgttccttggcttgttttcatatttccgttacagtattcttcactcatgagt...
species | Zea mays |
transcript | GRMZM2G157316_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCEST: gi|74240575|gb|DT648489.1|DT648489
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTC
EST: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG CTTCCACAGGTTATTTCATCATTTTTTEST: gi|5804682|gb|AI979652.1|AI979652
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTT
EST: TTGCTGGTTCTCTCTATGGTCTAAATGTGCTCGGCATCCGCAAGATGAAG CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCAEST: gi|18172562|gb|BM347950.1|BM347950
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
EST: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCAEST: gi|86470246|gb|DY236616.1|DY236616
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
EST: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCAEST: gi|78076078|gb|DV504512.1|DV504512
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
EST: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG CTTCCACAGGTTATTTCATCATTTTTTGNCA-GATATTTCGCCCCTTCCEST: gi|211167973|gb|FL398205.1|FL398205
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTG-CAAGATATTTCGCCCCTTCC
EST: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCAEST: gi|74237514|gb|DT645428.1|DT645428
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
EST: TGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGAATGAAG CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCEST: gi|76281473|gb|DV021041.1|DV021041
genomic: TGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAG-ATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCC
EST: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCAEST: gi|71759350|gb|DR957287.1|DR957287
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
EST: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCAEST: gi|76017527|gb|DT944697.1|DT944697
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
EST: TGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCCGCA-GATGAAG CTTCCACAGGTTATTTCATCANNNNNNNGCAAGATATTTCGCCCCCTTCCCEST: gi|71327755|gb|DR800511.1|DR800511
genomic: TGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCC-GCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTT-GCAAGATATTTCGCCCC-TTCCC
EST: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCAEST: gi|86470086|gb|DY236456.1|DY236456
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
EST: GGCATCCGCAAGATGAAG CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCAEST: gi|78076077|gb|DV504511.1|DV504511
genomic: GGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
EST: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCAEST: gi|28985536|gb|CB350690.1|CB350690
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
EST: CATCCGCAAGATGAAG CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCAEST: gi|71450334|gb|DR831384.1|DR831384
genomic: CATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
EST: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCAEST: gi|149046880|gb|EE048091.2|EE048091
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
EST: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG CTTCCACAGGTTATTTCATCATTTTTEST: gi|28986640|gb|CB351236.1|CB351236
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTT
EST: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCAEST: gi|6020337|gb|AW065265.1|AW065265
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
EST: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCAEST: gi|78022528|gb|DV490915.1|DV490915
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
EST: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCAEST: gi|93013208|gb|EB638728.1|EB638728
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
EST: AAATGTGCTCGGCATCCGCAAGATGAAG CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCAEST: gi|110532788|gb|EE036968.1|EE036968
genomic: AAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
EST: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCAEST: gi|148958569|gb|EC904813.2|EC904813
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
EST: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG CTTCCACAGGTTTATT-CATCATTTTTTGCAAGATATTTCGCCCCCTTCCCEST: gi|45568649|gb|CK986167.1|CK986167
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTT-ATTTCATCATTTTTTGCAAGATATTTCGCCCC-TTCCC
EST: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCAEST: gi|76282774|gb|DV022342.1|DV022342
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
EST: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCAEST: gi|71450335|gb|DR831385.1|DR831385
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
EST: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG CTTCCACAGGT-ATTTCATCATTTTTEST: gi|71433037|gb|DR814087.1|DR814087
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTT
EST: TTGCGGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCAEST: gi|71417979|gb|DR804274.1|DR804274
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
EST: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCAEST: gi|86470930|gb|DY237300.1|DY237300
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
EST: TTGCTGGTTCTCTCTATCGTTTAAATGTGCTCGGCATCCGCAAGATGAAG CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCAEST: gi|71417992|gb|DR804275.1|DR804275
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
EST: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTTCCCCEST: gi|148999920|gb|EE036969.2|EE036969
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTT-CCCC
EST: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTTCGCCCCCTTCCCEST: gi|31354976|gb|CD439333.1|CD439333
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTT-CGCCCC-TTCCC
EST: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCEST: gi|111189834|gb|EE287970.1|EE287970
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCC
EST: TTGCGGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCAEST: gi|76281474|gb|DV021042.1|DV021042
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
EST: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCTCCCEST: gi|71305917|gb|DR789089.1|DR789089
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTC-CCC
EST: GCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCAEST: gi|76914064|gb|DV165396.1|DV165396
genomic: GCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
EST: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCAEST: gi|71438421|gb|DR819471.1|DR819471
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
EST: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCAEST: gi|76017526|gb|DT944696.1|DT944696
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
EST: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTTTATCTTCTTGGAAGCGCTCCCTTATTCCTGGTATATTTGGTCTGGTTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaacatcacttttccagcttgtattttagtactgttaatatttgttccttggcttgttttcatatttccgttacagtattcttcactcatgagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG