1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CTATTTCTTTTGAGAGCGGCTGGATTTTTGCTGCCATGCTATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGACAGgttggtggctcggtgctaatggaaatgtttctttcatgtgtatactgtattgagtctattgactcctgaggaaaaagaattccaggatactattcatacc...
species | Zea mays |
transcript | GRMZM2G156734_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGACAG GAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAACEST: gi|60357633|gb|DN224606.1|DN224606
genomic: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGACAGgttggtggct ... gttacgtcagGAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAAC
EST: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGACAG GAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTTTGCATCGGAACEST: gi|74242886|gb|DT650800.1|DT650800
genomic: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGACAGgttggtggct ... gttacgtcagGAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAAC
EST: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGACAG GAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAACEST: gi|78545094|gb|DV622592.1|DV622592
genomic: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGACAGgttggtggct ... gttacgtcagGAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAAC
EST: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGACAG GAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAACEST: gi|5871396|gb|AW017867.1|AW017867
genomic: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGACAGgttggtggct ... gttacgtcagGAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAAC
EST: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGACAG GAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAACEST: gi|6031346|gb|AW076203.1|AW076203
genomic: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGACAGgttggtggct ... gttacgtcagGAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAAC
EST: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGACAG GAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAACEST: gi|32924962|gb|CF029774.1|CF029774
genomic: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGACAGgttggtggct ... gttacgtcagGAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAAC
EST: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGGCAG GAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAACEST: gi|32924741|gb|CF029553.1|CF029553
genomic: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGACAGgttggtggct ... gttacgtcagGAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAAC
EST: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGGCAG GAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAACEST: gi|166528927|gb|EG304034.1|EG304034
genomic: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGACAGgttggtggct ... gttacgtcagGAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAAC
EST: TAGTATCATGCAGCGTCAAAAGACAAAGACAG GAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAACEST: gi|5770167|gb|AI973341.1|AI973341
genomic: TAGTATCATGCAGCGTC-AAAGACAAAGACAGgttggtggct ... gttacgtcagGAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAAC
EST: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGACAG GAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAACEST: gi|32925907|gb|CF030719.1|CF030719
genomic: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGACAGgttggtggct ... gttacgtcagGAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAAC
EST: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGGCAG GAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAACEST: gi|78125041|gb|DV543425.1|DV543425
genomic: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGACAGgttggtggct ... gttacgtcagGAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAAC
EST: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGACAG GAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAACEST: gi|32925165|gb|CF029977.1|CF029977
genomic: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGACAGgttggtggct ... gttacgtcagGAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAAC
EST: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGGCAG GAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAACEST: gi|5325050|gb|AI783241.1|AI783241
genomic: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGACAGgttggtggct ... gttacgtcagGAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAAC
EST: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGACAG GAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAACEST: gi|78074789|gb|DV503223.1|DV503223
genomic: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGACAGgttggtggct ... gttacgtcagGAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAAC
EST: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGACAG GAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAACEST: gi|32926687|gb|CF031499.1|CF031499
genomic: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGACAGgttggtggct ... gttacgtcagGAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAAC
EST: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGGCAG GAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAACEST: gi|60358023|gb|DN224996.1|DN224996
genomic: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGACAGgttggtggct ... gttacgtcagGAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAAC
EST: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGACAG GAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAACEST: gi|71332392|gb|DR803152.1|DR803152
genomic: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGACAGgttggtggct ... gttacgtcagGAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAAC
EST: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGACAG GAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAACEST: gi|6031347|gb|AW076204.1|AW076204
genomic: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGACAGgttggtggct ... gttacgtcagGAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAAC
EST: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGACAG GAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAACEST: gi|32925763|gb|CF030575.1|CF030575
genomic: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGACAGgttggtggct ... gttacgtcagGAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAAC
EST: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGGCAG GAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAACEST: gi|16378881|gb|BI992655.1|BI992655
genomic: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGACAGgttggtggct ... gttacgtcagGAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAAC
EST: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGACAG GAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAACEST: gi|86469928|gb|DY236298.1|DY236298
genomic: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGACAGgttggtggct ... gttacgtcagGAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAAC
EST: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGACAG GAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAACEST: gi|211448714|gb|FL094698.1|FL094698
genomic: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGACAGgttggtggct ... gttacgtcagGAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAAC
EST: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGACAG GAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAACEST: gi|5846862|gb|AI999945.1|AI999945
genomic: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGACAGgttggtggct ... gttacgtcagGAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAAC
EST: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGACAG GAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAACEST: gi|32926380|gb|CF031192.1|CF031192
genomic: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGACAGgttggtggct ... gttacgtcagGAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAAC
EST: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGGCAG GAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAACEST: gi|32924716|gb|CF029528.1|CF029528
genomic: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGACAGgttggtggct ... gttacgtcagGAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAAC
EST: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGGCAG GAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAACEST: gi|60395273|gb|DN228142.1|DN228142
genomic: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGACAGgttggtggct ... gttacgtcagGAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAAC
EST: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGACAG GAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAACEST: gi|32840136|gb|CD979817.1|CD979817
genomic: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGACAGgttggtggct ... gttacgtcagGAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAAC
EST: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGGCAG GGAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAAEST: gi|60336732|gb|DN203705.1|DN203705
genomic: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGACAGgttggtggct ... gttacgtcagG-AAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAA
EST: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGACAG GAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAACEST: gi|78021497|gb|DV489884.1|DV489884
genomic: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGACAGgttggtggct ... gttacgtcagGAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAAC
EST: TTAGTATCATGCAGCGTCAAAGACAAAGACAG GAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTTTGCATCGGAACEST: gi|211013250|gb|FL462098.1|FL462098
genomic: TTAGTATCATGCAGCGTCAAAGACAAAGACAGgttggtggct ... gttacgtcagGAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAAC
EST: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGACAG GAAGAAGCCATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAAC
genomic: ATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGACAGgttggtggct ... gttacgtcagGAAGAAGCAATGCTATTACCAACGGAAGTGGCGATCATTCTGCATCGGAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTATTTCTTTTGAGAGCGGCTGGATTTTTGCTGCCATGCTATATTATGGCTTGGGCTATTAGTATCATGCAGCGTCAAAGACAAAGACAGgttggtggctcggtgctaatggaaatgtttctttcatgtgtatactgtattgagtctattgactcctgaggaaaaagaattccaggatactattcatacc
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