1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CTGTGACCATTATGGCACAATGCGCATCAATGGAAGTGGCCAGTACTCCTGCAAGCTTAAATTTAAAGAACAGTCAATTATTGATCGCAATCCACACCAGgtaactcagtaacttgaaacttctacatatgtgataggaactgttcaaaggaaaccttttgctttgaaaaataagggcatattttattataacagagcag...
species | Zea mays |
transcript | GRMZM2G156608_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GCAAGCTTAAATTTAAAGAACAGTCAATTATTGATCGCAATCCACACCAG GTGCATGGATTTGTGCAAGATAATAGAACAGGGCAAAAAGTAGCTATGTTAEST: gi|60400940|gb|DN233747.1|DN233747
genomic: GCAAGCTTAAATTTAAAGAACAGTCAATTATTGATCGCAATCCACACCAGgtaactcagt ... atttgtgcagGTGCATGGATTTGTGCAAGATAATAGAACAGGGCAAAAAGTAGCTATGTTA
EST: GCAAGCTTAAATTTAAAGAACAGTCAATTATTGATCGCAATCCACACCAG GTGCATGGATTTGTGCAAGATAATAGAACAGGGCAAAAAGTAGCTATGTTAEST: gi|108953726|gb|EC364860.1|EC364860
genomic: GCAAGCTTAAATTTAAAGAACAGTCAATTATTGATCGCAATCCACACCAGgtaactcagt ... atttgtgcagGTGCATGGATTTGTGCAAGATAATAGAACAGGGCAAAAAGTAGCTATGTTA
EST: GCAAGCTTAAATTTAAAGAACAGTCAATTATTGATCGCAATCCACACCAG GTGCATGGATTTGTGCAAGATAATAGAACAGGGCAAAAAGTAGCTATGTTA
genomic: GCAAGCTTAAATTTAAAGAACAGTCAATTATTGATCGCAATCCACACCAGgtaactcagt ... atttgtgcagGTGCATGGATTTGTGCAAGATAATAGAACAGGGCAAAAAGTAGCTATGTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGTGACCATTATGGCACAATGCGCATCAATGGAAGTGGCCAGTACTCCTGCAAGCTTAAATTTAAAGAACAGTCAATTATTGATCGCAATCCACACCAGgtaactcagtaacttgaaacttctacatatgtgataggaactgttcaaaggaaaccttttgctttgaaaaataagggcatattttattataacagagcag
- - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC