1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTGCTCTTTCCCATCTGTGTCATCATGCAAAGAAATTGAAGTTACACCTTCTAGTTCTGTCTATCACTGTAAAATTGGTGCTGTTGATGCTGCTGCAAAGgtttttgttctttcaccttttattccttgcatcttctgtgtttttttggtctcggtacttgactttgttgcaattgcag
species | Zea mays |
transcript | GRMZM2G155312_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CTAGTTCTGTCTATCACTGTAAAATTGGTGCTGTTGATGCTGCTGCAAAG ATACGATATCTGGATACTCGTAGGGTCTCAAATGATGAAGTTAAACTTTTTEST: gi|211241154|gb|FL072655.1|FL072655
genomic: CTAGTTCTGTCTATCACTGTAAAATTGGTGCTGTTGATGCTGCTGCAAAGgtttttgttc ... gcaattgcagATACGATATCTGGATACTCGTAGGGTCTCAAATGATGAAGTTAAACTTTTT
EST: CTAGTTCTGTCTATCACTGTAAAATTGGTGCTGTTGATGCTGCTGCAAAG ATACGATATCTGGATACTCGTAGGGTCTCAAATGATGAAGTTAAACTTTTTEST: gi|32930407|gb|CF035219.1|CF035219
genomic: CTAGTTCTGTCTATCACTGTAAAATTGGTGCTGTTGATGCTGCTGCAAAGgtttttgttc ... gcaattgcagATACGATATCTGGATACTCGTAGGGTCTCAAATGATGAAGTTAAACTTTTT
EST: CTAGTTCTGTCTATCACTGTAAAATTGGTGCTGTTGATGCTGCTGCAAAG ATACGATATCTGGATACTCGTAGGGTCTCAAATGATGAAGTTAAACTTTTT
genomic: CTAGTTCTGTCTATCACTGTAAAATTGGTGCTGTTGATGCTGCTGCAAAGgtttttgttc ... gcaattgcagATACGATATCTGGATACTCGTAGGGTCTCAAATGATGAAGTTAAACTTTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCTCTTTCCCATCTGTGTCATCATGCAAAGAAATTGAAGTTACACCTTCTAGTTCTGTCTATCACTGTAAAATTGGTGCTGTTGATGCTGCTGCAAAGgtttttgttctttcaccttttattccttgcatcttctgtgtttttttggtctcggtacttgactttgttgcaattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG