Sequence
atgc intronic sequence ATGC exonic sequenceGGCCTTAGTAGGGGTTATTGATGATTATTTTGATGGATACTACACTGAAGAAATGATTGAATCTCAGgtagttttgaagttgtgggtcttgatgcatgcactcttttccatggaacatttgaactatgttgctgctcaatacacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G154883_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os03g17540.1 (Oryza sativa), 5'ss of exon 8
GGCCTTAGTAGGGGTTATTGATGATTATTTTGATGGATACTACACTGAAGAAATGATTGAATCTCAGgtagttttgaagttgtgggtcttgatgcatgcactcttttccatggaacatttgaactatgttgctgctcaatacacag
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GGCTCTGGTGGGGGTCATTGATGAGTATTTTGATGGTTATTACACTGAGGAAATGATTGAATCTCAGgtacttcttaattcatg-------atacatgtaatgtttccca---aaatcctcgttaatgttactgcccgtt-tacag
upper sequence: GRMZM2G154883_T02 (Zea mays), 5'ss of exon 7
lower sequence: AT2G37290.1 (Arabidopsis thaliana), 5'ss of exon 7
GGCCTTAGTAGGGGTTATTGATGATTATTTTGATGGATACTACACTGAAGAAATGATTGAATCTCAGgtagttttgaagttgtgggtcttgatgcatgcactcttttccatggaacatttgaactatgttgctgctcaatacacag---------
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GACTTTGGTTGGGATAATTGATGATTATTTTGATGGCTACTATACTGAAGAAATGATAGAATCTCAGgtaacagttcatccaaaaggctt--ctgattatttctttttcttacaacatttctagaaagtgaccattgtgaatctacttctcttag
upper sequence: GRMZM2G154883_T02 (Zea mays), 5'ss of exon 7
lower sequence: Vv08s0040g03050.t01 (Vitis vinifera), 5'ss of exon 7
GGCCTTAGTAGGGGTTATTGATGATTATTTTGATGGATACTACACTGAAGAAATGATTGAATCTCAGgta--gttttgaagttgtgggtcttgatgcatgcactcttttccatggaacatttgaactatgttgctgctcaatacacag-----------------------------------------------------------------------------------------
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GACTTTGGTGGGTATTCTTGATGATTATTTCGATGGCTACTATTCAGAGGAAATGATAGAATCTCAGgtaatgtgttttcactgtccagagttgtatggtcactatcattaatttcattctggtattagcatacacttctatgtttgttttgagttttcccctatcaaccttaataaatatgccgaggacactaatttaatagttgtgctggtttgagaaaagttctgtattgacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211448474|gb|FL194336.1|FL194336EST: TTGATGATTATTTTGATGGATACTACACTGAAGAAATGATTGAATCTCAG GTTGACCAACTCGTCCTTGAGGAGGTTGTACGAGAAAGGTTCCCTAAATTG
genomic: TTGATGATTATTTTGATGGATACTACACTGAAGAAATGATTGAATCTCAGgtagttttga ... caatacacagGTTGACCAACTCGTCCTTGAGGAGGTTGTACGAGAAAGGTTCCCTAAATTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGCCTTAGTAGGGGTTATTGATGATTATTTTGATGGATACTACACTGAAGAAATGATTGAATCTCAGgtagttttgaagttgtgggtcttgatgcatgcactcttttccatggaacatttgaactatgttgctgctcaatacacag
- - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - AAGAAA