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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGGATCTCGCCGGCCTCGAGATGGCCAACCTGCGCGGCGGCGTCGGGGGGCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAGgtgcgtctcgggctacggataagattgatgcattgtacttgtggatcgattcggttggggttggtgtcacgaacacacgcttgtggtactggggctgggg...

Basic information

species Zea mays
transcript GRMZM2G153704_T01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148971787|gb|EE022525.2|EE022525
EST:     GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAG                         TTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
genomic: GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAGgtgcgtctcg ... ccttttacagTTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
EST: gi|211212281|gb|FL401789.1|FL401789
EST:     GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAG                         TTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
genomic: GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAGgtgcgtctcg ... ccttttacagTTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
EST: gi|148977355|gb|EE026050.2|EE026050
EST:     GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAG                         TTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
genomic: GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAGgtgcgtctcg ... ccttttacagTTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
EST: gi|211244572|gb|FL131421.1|FL131421
EST:     GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAG                         TTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
genomic: GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAGgtgcgtctcg ... ccttttacagTTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
EST: gi|148996907|gb|EE035711.2|EE035711
EST:     GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAG                         TTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
genomic: GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAGgtgcgtctcg ... ccttttacagTTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
EST: gi|211153701|gb|FL418638.1|FL418638
EST:     GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAG                         TTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
genomic: GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAGgtgcgtctcg ... ccttttacagTTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
EST: gi|78075828|gb|DV504262.1|DV504262
EST:     GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAG                         TTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
genomic: GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAGgtgcgtctcg ... ccttttacagTTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
EST: gi|78078828|gb|DV507240.1|DV507240
EST:     GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAG                         TTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
genomic: GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAGgtgcgtctcg ... ccttttacagTTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
EST: gi|211441205|gb|FL381373.1|FL381373
EST:     GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAG                         TTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
genomic: GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAGgtgcgtctcg ... ccttttacagTTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
EST: gi|211416246|gb|FL417246.1|FL417246
EST:     GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAG                         TTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
genomic: GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAGgtgcgtctcg ... ccttttacagTTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
EST: gi|211465272|gb|FL339432.1|FL339432
EST:     GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAG                         TTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
genomic: GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAGgtgcgtctcg ... ccttttacagTTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
EST: gi|211210064|gb|FL412311.1|FL412311
EST:     GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAG                         TTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
genomic: GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAGgtgcgtctcg ... ccttttacagTTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
EST: gi|149083192|gb|EE172463.2|EE172463
EST:     GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAG                         TTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
genomic: GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAGgtgcgtctcg ... ccttttacagTTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
EST: gi|148981335|gb|EE027589.2|EE027589
EST:     GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAG                         TTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
genomic: GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAGgtgcgtctcg ... ccttttacagTTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
EST: gi|211349168|gb|FL426325.1|FL426325
EST:     GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAG                         TTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
genomic: GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAGgtgcgtctcg ... ccttttacagTTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
EST: gi|211327531|gb|FL370114.1|FL370114
EST:     G-TCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAG                         TTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
genomic: GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAGgtgcgtctcg ... ccttttacagTTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
EST: gi|149082633|gb|EE171834.2|EE171834
EST:     GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAG                         TTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
genomic: GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAGgtgcgtctcg ... ccttttacagTTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
EST: gi|148953947|gb|EC899333.2|EC899333
EST:     GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAG                         TTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
genomic: GCTCTTCCGCGCGAGCCCGCGCTACGGGCGCTTGCAAGCCACGGCGGCAGgtgcgtctcg ... ccttttacagTTGACCCTGAAGATATTCCATTGGAGAAGGTTCAAGTTAAATCCTCAGGAC