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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCGCTTAGCCAGAGCAGTGGAAGTGAAATTGGAAGCTTTCTTGGTTGGGCTATGGCAATGATTTATATGGGTGGGCGGCTTCCCCAGATTTTGTTAAATgtgagacttcacaaaaacagacatttacttttcgtgatttctcttataggaaatagattttctgtattacaatactgggttactatatgtagaatatatc...

Basic information

species Zea mays
transcript GRMZM2G153434_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G153434_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os01g16170.5 (Oryza sativa), 5'ss of exon 5
ATCGCTTAGCCAGAGCAGTGGAAGTGAAATTGGAAGCTTTCTTGGTTGGGCTATGGCAATGATTTATATGGGTGGGCGGCTTCCCCAGATTTTGTTAAATgtgagacttcacaaaaa--cagacatttactt-ttcgtgatttctcttataggaaatagattttctgtattacaatactgggttactatatgtagaatatatc
|||  | ||| |  |||||||||||| |||||||||||| |||||||||||||||||  | || ||||||||||| || ||||||||||| | ||||||||| | |||||||||| |  |  || |||  || ||  | | |    | | |  |     | | | |  ||  ||||  || ||  | |   ||| ||  |   
ATCTGTCAGCAATGGCAGTGGAAGTGGAATTGGAAGCTTCCTTGGTTGGGCTATGGCGGTAATCTATATGGGTGGACGACTTCCCCAGATCTGGTTAAATgtaatacttcacaaatagcccaacgtttttttctttcttactatattgagattaggagaaatgtgttcatggcaattttgtgtggcaactggtaaaaagt---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89106847|gb|DY577064.1|DY577064
EST:     CTATGGCAATGATTTATATGGGTGGGCGGCTTCCCCAGATTTTGTTAAAT                         ATGCAAAGAGGCCACGTTGAG
genomic: CTATGGCAATGATTTATATGGGTGGGCGGCTTCCCCAGATTTTGTTAAATgtgagacttc ... taccctgcagATGCAAAGAGGCCACGTTGAG
EST: gi|89106878|gb|DY577095.1|DY577095
EST:     CTATGGCAATGATTTATATGGGTGGGCGGCTTCCCCAGATTTTGTTAAAT                         ATGCAAAGAGGCCACGTTGAG
genomic: CTATGGCAATGATTTATATGGGTGGGCGGCTTCCCCAGATTTTGTTAAATgtgagacttc ... taccctgcagATGCAAAGAGGCCACGTTGAG