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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTTGATATGCTTATGAAAGCCGCTGGGAAAGACTGCACTGCTTTGTTCAgtatccttctattattatttctgcactgtgatacattatcttgctgcttgtgggctcatactggaacaccattcttattattatgcaagctggtgtggcc...

Basic information

species Zea mays
transcript GRMZM2G152438_T02
intron # 6
splice site 5'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G152438_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os07g12830.3 (Oryza sativa), 5'ss of exon 4
GTGTTGATATGCTTATGAAAGCCGCTGGGAAAGACTGCACTGCTTTGTTCAgtatccttctattattatttct---gcactgtgatacattatcttgctgcttgtgggctcatactggaacaccattcttattattatgcaagc-tggtgtggcc
| ||||||||||||||||| || ||||| |||||||  || ||| |||||||||||||||||||||||||  |    ||   |  || | |  | |||||| ||| |  |   | |  |||    || |  |||  ||  ||   || | ||   
GAGTTGATATGCTTATGAAGGCTGCTGGAAAAGACTCGACCGCTCTGTTCAgtatccttctattattattgttcaaacatacttttaaagttgcctgctgcctgtcg--tagaatttcaactgagttttagttagaatcaaaatatgctttga--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78077673|gb|DV506107.1|DV506107
EST:     TGTTGATATGCTTATGAAAGCCGCTGGGAAAGACTGCACTGCTTTGTTCA                         ATAAATACCATGCTTGGGTAAATGCAGAGTTCCTCCTGGAGAAGTGCCTTG
genomic: TGTTGATATGCTTATGAAAGCCGCTGGGAAAGACTGCACTGCTTTGTTCAgtatccttct ... tgactattagATAAATACCATGCTTGGGTAAATGCAGAGTTCCTCCTGGAGAAGTGCCTTG
EST: gi|50328462|gb|CO523588.1|CO523588
EST:     TGTTGATATGCTTATGAAAGCCGCTGGGAAAGACTGCACTGCTTTGTTCA                         ATAAATACCATGCTTGGGTAAATGCAGAGTTCCTCCTGGAGAAGTGCCTTG
genomic: TGTTGATATGCTTATGAAAGCCGCTGGGAAAGACTGCACTGCTTTGTTCAgtatccttct ... tgactattagATAAATACCATGCTTGGGTAAATGCAGAGTTCCTCCTGGAGAAGTGCCTTG
EST: gi|78122153|gb|DV540537.1|DV540537
EST:     TGTTGATATGCTTATGAAAGCCGCTGGGAAAGACTGCACTGCTTTGTTCA                         ATAAATACCATGCTTGGGTAAATGCAGAGTTCCTCCTGGAGAAGTGCCTTG
genomic: TGTTGATATGCTTATGAAAGCCGCTGGGAAAGACTGCACTGCTTTGTTCAgtatccttct ... tgactattagATAAATACCATGCTTGGGTAAATGCAGAGTTCCTCCTGGAGAAGTGCCTTG