Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCAGTATCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCGCCATTTTTGACgtaagtaccttgtgatccacattctatattttttttttgggggggggggagcagttatggggtcattgccattattatagattatctcaaaaaagaaagg...

Basic information

species Zea mays
transcript GRMZM2G150209_T01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26558397|gb|CA830632.1|CA830632
EST:     TCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCGCCATTTTTGAC                         GGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
genomic: TCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCGCCATTTTTGACgtaagtacct ... ccctttgcagGGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
EST: gi|149105392|gb|EE290900.2|EE290900
EST:     TCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCGCCATTTTTGAC                         GGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCCCTGCATCAGAAACC
genomic: TCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCGCCATTTTTGACgtaagtacct ... ccctttgcagGGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
EST: gi|78085956|gb|DV514349.1|DV514349
EST:     CATGGTTGCGCCATTTTTGAC                         GGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
genomic: CATGGTTGCGCCATTTTTGACgtaagtacct ... ccctttgcagGGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
EST: gi|149076762|gb|EE165408.2|EE165408
EST:     TCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCGCCATTTTTGAC                         GGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
genomic: TCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCGCCATTTTTGACgtaagtacct ... ccctttgcagGGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
EST: gi|71763175|gb|DR961112.1|DR961112
EST:     TCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCGCCATTTTTGAC                         GGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
genomic: TCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCGCCATTTTTGACgtaagtacct ... ccctttgcagGGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
EST: gi|6469019|gb|AW191795.1|AW191795
EST:     TCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCACCATTTTTGAC                         GGGTCTTAAGGCTTGGATTGCCACACATCCTCCNCCACTGCATCAGAAACC
genomic: TCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCGCCATTTTTGACgtaagtacct ... ccctttgcagGGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
EST: gi|67023920|gb|CO452669.1|CO452669
EST:     TCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCGCCATTTTTGAC                         GGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
genomic: TCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCGCCATTTTTGACgtaagtacct ... ccctttgcagGGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
EST: gi|8930109|gb|BE224947.1|BE224947
EST:     GGTTGCGCCATTTTTGAC                         GGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
genomic: GGTTGCGCCATTTTTGACgtaagtacct ... ccctttgcagGGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
EST: gi|87156906|gb|DY401695.1|DY401695
EST:     TCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCGCCATTTTTGAC                         GGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
genomic: TCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCGCCATTTTTGACgtaagtacct ... ccctttgcagGGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
EST: gi|110963433|gb|EE183333.1|EE183333
EST:     TCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCGCCATTTTTGAC                         GGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
genomic: TCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCGCCATTTTTGACgtaagtacct ... ccctttgcagGGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
EST: gi|5325088|gb|AI783279.1|AI783279
EST:     TCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCACCATTTTTGAC                         GGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
genomic: TCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCGCCATTTTTGACgtaagtacct ... ccctttgcagGGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
EST: gi|5846898|gb|AI999981.1|AI999981
EST:     TCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCACCATTTTTGAC                         GGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
genomic: TCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCGCCATTTTTGACgtaagtacct ... ccctttgcagGGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
EST: gi|22133528|gb|BQ833762.1|BQ833762
EST:     TCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCGCCATTTTTGAC                         GGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
genomic: TCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCGCCATTTTTGACgtaagtacct ... ccctttgcagGGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
EST: gi|211125410|gb|FL031448.1|FL031448
EST:     TGAATGGAATGAAGCTGTACATGGTTGC-ACATTTTTGAC                         GGGTCTTAAGGCTTGGATTGCCACACATCCTCCANCACTGCATCAGAAACC
genomic: TGAATGGAATGAAGCTGTACATGGTTGCGCCATTTTTGACgtaagtacct ... ccctttgcagGGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
EST: gi|76916674|gb|DV166495.1|DV166495
EST:     TCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCGCCATTTTTGAC                         GGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCCCTGCATCAGAAACC
genomic: TCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCGCCATTTTTGACgtaagtacct ... ccctttgcagGGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
EST: gi|211094011|gb|FL456459.1|FL456459
EST:     TCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCACCATTTTTGAC                         GGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
genomic: TCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCGCCATTTTTGACgtaagtacct ... ccctttgcagGGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
EST: gi|91870113|gb|EB400708.1|EB400708
EST:     TCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCGCCATTTTTGAC                         GGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
genomic: TCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCGCCATTTTTGACgtaagtacct ... ccctttgcagGGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
EST: gi|78084663|gb|DV513056.1|DV513056
EST:     TCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCGCCATTTTTGAC                         GGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
genomic: TCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCGCCATTTTTGACgtaagtacct ... ccctttgcagGGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
EST: gi|74238912|gb|DT646826.1|DT646826
EST:     TCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCGCCATTTTTGAC                         GGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
genomic: TCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCGCCATTTTTGACgtaagtacct ... ccctttgcagGGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
EST: gi|60291833|gb|DN190072.1|DN190072
EST:     TCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCGCCATTTTTGAC                         GGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
genomic: TCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCGCCATTTTTGACgtaagtacct ... ccctttgcagGGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
EST: gi|78087169|gb|DV515562.1|DV515562
EST:     TCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCGCCATTTTTGAC                         GGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
genomic: TCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCGCCATTTTTGACgtaagtacct ... ccctttgcagGGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
EST: gi|211134459|gb|FL464550.1|FL464550
EST:     TCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCGCCATTTTTGAC                         GGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
genomic: TCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCGCCATTTTTGACgtaagtacct ... ccctttgcagGGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
EST: gi|18383494|gb|BM416694.1|BM416694
EST:     TCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCGCCATTTTTGAC                         GGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
genomic: TCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCGCCATTTTTGACgtaagtacct ... ccctttgcagGGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
EST: gi|211233125|gb|FL455326.1|FL455326
EST:     TCTCGTGCAGTGAATGGAATGAAGCTGTACAT-GTTGCACCATTTTTGAC                         GGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
genomic: TCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCGCCATTTTTGACgtaagtacct ... ccctttgcagGGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
EST: gi|78087974|gb|DV516367.1|DV516367
EST:     CTCGTGCAGGGAATGGAATGAAGCTGTACATGGGTTGCGCCATTTTTGAC                         GGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
genomic: CTCGTGCAGTGAATGGAATGAAGCTGTACAT-GGTTGCGCCATTTTTGACgtaagtacct ... ccctttgcagGGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
EST: gi|1366570|gb|W59832.1|W59832
EST:     TCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCGCCATTTTTGAC                         GGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
genomic: TCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCGCCATTTTTGACgtaagtacct ... ccctttgcagGGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
EST: gi|78104490|gb|DV522908.1|DV522908
EST:     TCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCGCCATTTTTGAC                         GGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
genomic: TCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCGCCATTTTTGACgtaagtacct ... ccctttgcagGGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
EST: gi|94475807|gb|EB704765.1|EB704765
EST:     TCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCGCCATTTTTGAC                         GGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
genomic: TCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCGCCATTTTTGACgtaagtacct ... ccctttgcagGGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
EST: gi|78122727|gb|DV541111.1|DV541111
EST:     TCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCGCCATTTTTGAC                         GGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
genomic: TCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCGCCATTTTTGACgtaagtacct ... ccctttgcagGGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
EST: gi|18383699|gb|BM416899.1|BM416899
EST:     TCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCGCCATTTTTGAC                         GGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
genomic: TCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCGCCATTTTTGACgtaagtacct ... ccctttgcagGGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
EST: gi|5566698|gb|AI881714.1|AI881714
EST:     TCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCGCCATTTTTGAC                         GGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
genomic: TCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCGCCATTTTTGACgtaagtacct ... ccctttgcagGGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC
EST: gi|28982677|gb|BQ539500.2|BQ539500
EST:     TGTACATGGTTGCGCCATTTTTGAC                         GGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCATTGCATCAGAAACC
genomic: TGTACATGGTTGCGCCATTTTTGACgtaagtacct ... ccctttgcagGGGTCTTAAGGCTTGGATTGCCACACATCCTCCACCACTGCATCAGAAACC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCAGTATCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCGCCATTTTTGACgtaagtaccttgtgatccacattctatattttttttttgggggggggggagcagttatggggtcattgccattattatagattatctcaaaaaagaaagg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG