1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CAGTCCGGGGGGTGCTGTTGCATGGCCCACCAGGGTGCTCCAAGACTACTCTTGCCAAGGCTGCAGCGCATGCTGCCCAAGCTTCTTTCTTTTCTTTGAGgttcatcaggaaacaacattttattttacgaaaataacagttcactttccgttgtgtgaagaacatagaacttttagcccacagtatttaaaacagatta...
species | Zea mays |
transcript | GRMZM2G149994_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CTTGCCAAGGCTGCAGCGCATGCTGCCCAAGCTTCTTTCTTTTCTTTGAG TGGTGCAGATTTATATTCCAAGTATGTTGGAGAAGGGGAAGCTCTGTTGCGEST: gi|67026000|gb|CO454749.1|CO454749
genomic: CTTGCCAAGGCTGCAGCGCATGCTGCCCAAGCTTCTTTCTTTTCTTTGAGgttcatcagg ... cttataacagTGGTGCAGATTTATATTCCAAGTATGTTGGAGAAGGGGAAGCTCTGTTGCG
EST: CTTGCCAAGGCTGCAGCGCATGCTGCCCAAGCTTCTTTCTTTTCTTTGAG TGGTGCAGATTTATATTCCAAGTATGTTGGAGAAGGGGAAGCTCTGTTGCGEST: gi|24934696|gb|CA452914.1|CA452914
genomic: CTTGCCAAGGCTGCAGCGCATGCTGCCCAAGCTTCTTTCTTTTCTTTGAGgttcatcagg ... cttataacagTGGTGCAGATTTATATTCCAAGTATGTTGGAGAAGGGGAAGCTCTGTTGCG
EST: CTTGCCAAGGCTGCAGCGCATGCTGCCCAAGCTTCTTTCTTTTCTTTGAG TGGTGCAGATTTATATTCCAAGTATGTTGGAGAAGGGGAAGCTCTGTTGCGEST: gi|67018676|gb|CO447425.1|CO447425
genomic: CTTGCCAAGGCTGCAGCGCATGCTGCCCAAGCTTCTTTCTTTTCTTTGAGgttcatcagg ... cttataacagTGGTGCAGATTTATATTCCAAGTATGTTGGAGAAGGGGAAGCTCTGTTGCG
EST: CTTGCCAAGGCTGCAGCGCATGCTGCCCAAGCTTCTTTCTTTTCTTTGAG TGGTGCAGATTTATATTCCAAGTATGTTGGAGAAGGGGAAGCTCTGTTGCGEST: gi|24961608|gb|CA483609.1|CA483609
genomic: CTTGCCAAGGCTGCAGCGCATGCTGCCCAAGCTTCTTTCTTTTCTTTGAGgttcatcagg ... cttataacagTGGTGCAGATTTATATTCCAAGTATGTTGGAGAAGGGGAAGCTCTGTTGCG
EST: CTTGCCAAGGCTGCAGCGCATGCTGCCCAAGCTTCTTTCTTTTCTTTGAG TGGTGCAGATTTATATTCCAAGTATGTTGGAGAAGGGGAAGCTCTGTTGCGEST: gi|33092600|gb|CF052594.1|CF052594
genomic: CTTGCCAAGGCTGCAGCGCATGCTGCCCAAGCTTCTTTCTTTTCTTTGAGgttcatcagg ... cttataacagTGGTGCAGATTTATATTCCAAGTATGTTGGAGAAGGGGAAGCTCTGTTGCG
EST: CTTGCCAAGGCTGCAGCGCATGCTGCCCAAGCTTCTTTCTTTTCTTTGAG TGGTGCAGATTTATATTCCAAGTATGTTGGAGAAGGGGAAGCTCTGTTGCGEST: gi|24773369|gb|CA408623.1|CA408623
genomic: CTTGCCAAGGCTGCAGCGCATGCTGCCCAAGCTTCTTTCTTTTCTTTGAGgttcatcagg ... cttataacagTGGTGCAGATTTATATTCCAAGTATGTTGGAGAAGGGGAAGCTCTGTTGCG
EST: CTTGCCAAGGCTGCAGCGCATGCTGCCCAAGCTTCTTTCTTTTCTTTGAG TGGTGCAGATTTATATTCCAAGTATGTTGGAGAAGGGGAAGCTCTGTTGCGEST: gi|24773164|gb|CA408418.1|CA408418
genomic: CTTGCCAAGGCTGCAGCGCATGCTGCCCAAGCTTCTTTCTTTTCTTTGAGgttcatcagg ... cttataacagTGGTGCAGATTTATATTCCAAGTATGTTGGAGAAGGGGAAGCTCTGTTGCG
EST: CTTGCCAAGGCTGCAGCGCATGCTGCCCAAGCTTCTTTCTTTTCTTTGAG TGGTGCAGATTTATATTCCAAGTATGTTGGAGAAGGGGAAGCTCTGTTGCG
genomic: CTTGCCAAGGCTGCAGCGCATGCTGCCCAAGCTTCTTTCTTTTCTTTGAGgttcatcagg ... cttataacagTGGTGCAGATTTATATTCCAAGTATGTTGGAGAAGGGGAAGCTCTGTTGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGTCCGGGGGGTGCTGTTGCATGGCCCACCAGGGTGCTCCAAGACTACTCTTGCCAAGGCTGCAGCGCATGCTGCCCAAGCTTCTTTCTTTTCTTTGAGgttcatcaggaaacaacattttattttacgaaaataacagttcactttccgttgtgtgaagaacatagaacttttagcccacagtatttaaaacagatta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT