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TGGTCATTGATCCCAGTTATGGGGAGCCCCTCCTGACTCAACCTCAGCCCAAGAAGTCTGCATGGgtaagctacaaccactacaagttcctagcattggcatttgtgacttcctaagcaattctggttcttcacgtaatcatatgttatgaatgtgctttcagat...
species | Zea mays |
transcript | GRMZM2G149576_T02 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTTATGGGGAGCCCCTCCTGACTCAACCTCAGCCCAAGAAGTCTGCATGG GAGACTTTCATGTTCAATCTGAGGTGGAAGAATATCCTTTGTGTTAATEST: gi|32841700|gb|CD981381.1|CD981381
genomic: GTTATGGGGAGCCCCTCCTGACTCAACCTCAGCCCAAGAAGTCTGCATGGgtaagctaca ... tttatttcagGAGACTTTCATGTTCAATCTGAGGTGGAAGAATATCCTT-GTGTTAAT
EST: GTTATGGGGAGCCCCTCCTGACTCAACCTCAGCCCAAGAAGTCTGCATGG GAGACTTTCATGTTCAATCTGAGGTGGAAGAATATCCTTGTGTTAATGTCTEST: gi|71763997|gb|DR961934.1|DR961934
genomic: GTTATGGGGAGCCCCTCCTGACTCAACCTCAGCCCAAGAAGTCTGCATGGgtaagctaca ... tttatttcagGAGACTTTCATGTTCAATCTGAGGTGGAAGAATATCCTTGTGTTAATGTCT
EST: GTTATGGGGAGCCCCTCCTGACTCTACCTCAGCCCAAGAAGTCTGCATGG GAGACTTTCATGTTCAATCTGAGGTGGAAGAATATCCTTGTGTTAATGTCTEST: gi|76013549|gb|DT940719.1|DT940719
genomic: GTTATGGGGAGCCCCTCCTGACTCAACCTCAGCCCAAGAAGTCTGCATGGgtaagctaca ... tttatttcagGAGACTTTCATGTTCAATCTGAGGTGGAAGAATATCCTTGTGTTAATGTCT
EST: GTTATGGGGAGCCCCTCCTGACTCAACCTCAGCCCAAGAAGTCTGCATGG GAGACTTTCATGTTCAATCTGAGGTGGAAGAATATCTTTGTGTTAATGTCTEST: gi|13237072|gb|BG355086.1|BG355086
genomic: GTTATGGGGAGCCCCTCCTGACTCAACCTCAGCCCAAGAAGTCTGCATGGgtaagctaca ... tttatttcagGAGACTTTCATGTTCAATCTGAGGTGGAAGAATATCCTTGTGTTAATGTCT
EST: GTTATGGGGAGCCCCTCCTGACTCAACCTCAGCCCAAGAAGTCTGCATGG GAGACTTTCATGTTCAATCTGAGGTGGAAGAATATCCTTGTGTTAATGTCTEST: gi|71772906|gb|DR970829.1|DR970829
genomic: GTTATGGGGAGCCCCTCCTGACTCAACCTCAGCCCAAGAAGTCTGCATGGgtaagctaca ... tttatttcagGAGACTTTCATGTTCAATCTGAGGTGGAAGAATATCCTTGTGTTAATGTCT
EST: GTTATGGGGAGCCCCTCCTGACTCACCCTCAGCCCAAGAAGTCTGCATGG GAGACTTTCATGTTCAATCTGAEST: gi|78104608|gb|DV523026.1|DV523026
genomic: GTTATGGGGAGCCCCTCCTGACTCAACCTCAGCCCAAGAAGTCTGCATGGgtaagctaca ... tttatttcagGAGACTTTCATGTTCAATCTGA
EST: GTTATGGGGAGCCCCTCCTGACTCAACCTCAGCCCAAGAAGTCTGCATGG GAGACTTTCATGTTCAATCTGANGTGGAAGAATATCCCTTGTGT-AATGTCEST: gi|71769874|gb|DR967811.1|DR967811
genomic: GTTATGGGGAGCCCCTCCTGACTCAACCTCAGCCCAAGAAGTCTGCATGGgtaagctaca ... tttatttcagGAGACTTTCATGTTCAATCTGAGGTGGAAGAATATCC-TTGTGTTAATGTC
EST: GTTATGGGGAGCCCCTCCTGACTCAACCTCAGCCCAAGAAGTCTGCATGG GAGACTTTCATGTTCAATCTGAGGTGGAAGAATATCCCTTGTGT-AATGTCEST: gi|13237258|gb|BG355272.1|BG355272
genomic: GTTATGGGGAGCCCCTCCTGACTCAACCTCAGCCCAAGAAGTCTGCATGGgtaagctaca ... tttatttcagGAGACTTTCATGTTCAATCTGAGGTGGAAGAATATCC-TTGTGTTAATGTC
EST: GTTATGGGGAGCCCCTCCTGACTCAACCTCAGCCCAAGAAGTCTGCATGG GAGACTTTCATGTTCAATCTGAGGTGGAAGAATATCCTTGTGTTAATGTCTEST: gi|211074549|gb|FL187269.1|FL187269
genomic: GTTATGGGGAGCCCCTCCTGACTCAACCTCAGCCCAAGAAGTCTGCATGGgtaagctaca ... tttatttcagGAGACTTTCATGTTCAATCTGAGGTGGAAGAATATCCTTGTGTTAATGTCT
EST: GTTATGGGGAGCCCCTCCTGACTCAAC-TCAGCC-AAGAAANCTGCATGG GAGACTT-CATGTTCAATCTGAAGTGGAAGA-TAACCTTGTGT-AATG
genomic: GTTATGGGGAGCCCCTCCTGACTCAACCTCAGCCCAAGAAGTCTGCATGGgtaagctaca ... tttatttcagGAGACTTTCATGTTCAATCTGAGGTGGAAGAATATCCTTGTGTTAATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGTCATTGATCCCAGTTATGGGGAGCCCCTCCTGACTCAACCTCAGCCCAAGAAGTCTGCATGGgtaagctacaaccactacaagttcctagcattggcatttgtgacttcctaagcaattctggttcttcacgtaatcatatgttatgaatgtgctttcagat
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT