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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTCATTGATCCCAGTTATGGGGAGCCCCTCCTGACTCAACCTCAGCCCAAGAAGTCTGCATGGgtaagctacaaccactacaagttcctagcattggcatttgtgacttcctaagcaattctggttcttcacgtaatcatatgttatgaatgtgctttcagat...

Basic information

species Zea mays
transcript GRMZM2G149576_T01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32841700|gb|CD981381.1|CD981381
EST:     GTTATGGGGAGCCCCTCCTGACTCAACCTCAGCCCAAGAAGTCTGCATGG                         GAGACTTTCATGTTCAATCTGAGGTGGAAGAATATCCTTGTGTTAATGTCT
genomic: GTTATGGGGAGCCCCTCCTGACTCAACCTCAGCCCAAGAAGTCTGCATGGgtaagctaca ... tttatttcagGAGACTTTCATGTTCAATCTGAGGTGGAAGAATATCCTTGTGTTAATGTCT
EST: gi|78104608|gb|DV523026.1|DV523026
EST:     GTTATGGGGAGCCCCTCCTGACTCAACCTCAGCCCAAGAAGTCTGCATGG                         GAGACTTTCATGTTCAATCTGANGTGGAAGAATATCCCTTGTGT-AATGTC
genomic: GTTATGGGGAGCCCCTCCTGACTCAACCTCAGCCCAAGAAGTCTGCATGGgtaagctaca ... tttatttcagGAGACTTTCATGTTCAATCTGAGGTGGAAGAATATCC-TTGTGTTAATGTC
EST: gi|211074549|gb|FL187269.1|FL187269
EST:     GTTATGGGGAGCCCCTCCTGACTCAAC-TCAGCC-AAGAAANCTGCATGG                         GAGACTT-CATGTTCAATCTGAAGTGGAAGA-TAACCTTGTGT-AATG
genomic: GTTATGGGGAGCCCCTCCTGACTCAACCTCAGCCCAAGAAGTCTGCATGGgtaagctaca ... tttatttcagGAGACTTTCATGTTCAATCTGAGGTGGAAGAATATCCTTGTGTTAATG
EST: gi|76013549|gb|DT940719.1|DT940719
EST:     GTTATGGGGAGCCCCTCCTGACTCAACCTCAGCCCAAGAAGTCTGCATGG                         GAGACTTTCATGTTCAATCTGAGGTGGAAGAATATCTTTGTGTTAATGTCT
genomic: GTTATGGGGAGCCCCTCCTGACTCAACCTCAGCCCAAGAAGTCTGCATGGgtaagctaca ... tttatttcagGAGACTTTCATGTTCAATCTGAGGTGGAAGAATATCCTTGTGTTAATGTCT
EST: gi|93282425|gb|EB674689.1|EB674689
EST:     GTTATGGGGAGCCCCTCCTGACTCAACCTCAGCCCAAGAAGTCTGCATGG                         GAGACTTTCATGTTCAATCTGAGGTGGAAGAATATCCTTTGTGTTAAT
genomic: GTTATGGGGAGCCCCTCCTGACTCAACCTCAGCCCAAGAAGTCTGCATGGgtaagctaca ... tttatttcagGAGACTTTCATGTTCAATCTGAGGTGGAAGAATATCCTT-GTGTTAAT
EST: gi|71772906|gb|DR970829.1|DR970829
EST:     GTTATGGGGAGCCCCTCCTGACTCACCCTCAGCCCAAGAAGTCTGCATGG                         GAGACTTTCATGTTCAATCTGA
genomic: GTTATGGGGAGCCCCTCCTGACTCAACCTCAGCCCAAGAAGTCTGCATGGgtaagctaca ... tttatttcagGAGACTTTCATGTTCAATCTGA
EST: gi|71769874|gb|DR967811.1|DR967811
EST:     GTTATGGGGAGCCCCTCCTGACTCAACCTCAGCCCAAGAAGTCTGCATGG                         GAGACTTTCATGTTCAATCTGAGGTGGAAGAATATCCCTTGTGT-AATGTC
genomic: GTTATGGGGAGCCCCTCCTGACTCAACCTCAGCCCAAGAAGTCTGCATGGgtaagctaca ... tttatttcagGAGACTTTCATGTTCAATCTGAGGTGGAAGAATATCC-TTGTGTTAATGTC
EST: gi|13237072|gb|BG355086.1|BG355086
EST:     GTTATGGGGAGCCCCTCCTGACTCAACCTCAGCCCAAGAAGTCTGCATGG                         GAGACTTTCATGTTCAATCTGAGGTGGAAGAATATCCTTGTGTTAATGTCT
genomic: GTTATGGGGAGCCCCTCCTGACTCAACCTCAGCCCAAGAAGTCTGCATGGgtaagctaca ... tttatttcagGAGACTTTCATGTTCAATCTGAGGTGGAAGAATATCCTTGTGTTAATGTCT
EST: gi|13237258|gb|BG355272.1|BG355272
EST:     GTTATGGGGAGCCCCTCCTGACTCAACCTCAGCCCAAGAAGTCTGCATGG                         GAGACTTTCATGTTCAATCTGAGGTGGAAGAATATCCTTGTGTTAATGTCT
genomic: GTTATGGGGAGCCCCTCCTGACTCAACCTCAGCCCAAGAAGTCTGCATGGgtaagctaca ... tttatttcagGAGACTTTCATGTTCAATCTGAGGTGGAAGAATATCCTTGTGTTAATGTCT
EST: gi|71763997|gb|DR961934.1|DR961934
EST:     GTTATGGGGAGCCCCTCCTGACTCTACCTCAGCCCAAGAAGTCTGCATGG                         GAGACTTTCATGTTCAATCTGAGGTGGAAGAATATCCTTGTGTTAATGTCT
genomic: GTTATGGGGAGCCCCTCCTGACTCAACCTCAGCCCAAGAAGTCTGCATGGgtaagctaca ... tttatttcagGAGACTTTCATGTTCAATCTGAGGTGGAAGAATATCCTTGTGTTAATGTCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGTCATTGATCCCAGTTATGGGGAGCCCCTCCTGACTCAACCTCAGCCCAAGAAGTCTGCATGGgtaagctacaaccactacaagttcctagcattggcatttgtgacttcctaagcaattctggttcttcacgtaatcatatgttatgaatgtgctttcagat

- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT