1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GGTTGTTCCTTATGGAGATCCAAGTGAACCACATTATCGCAAGAATGCATTTGATGCTGGAGAAGATGGACTTGGAAAAAATGCTCATTCTCTTAAGAAGgttattttattcagttcttgatgtgtatactttgacgttcaaaatttttctttgatttgactatgctctttaacctttttgtgcag
species | Zea mays |
transcript | GRMZM2G147884_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTGATGCTGGAGAAGATGGACTTGGAAAAAATGCTCATTCTCTTAAGAAG GGATGCGATTGCTTGGGCTACATAAAATATTTTGATGCACATTTCACAAACEST: gi|211285877|gb|FL038890.1|FL038890
genomic: TTGATGCTGGAGAAGATGGACTTGGAAAAAATGCTCATTCTCTTAAGAAGgttattttat ... ttttgtgcagGGATGCGATTGCTTGGGCTACATAAAATATTTTGATGCACATTTCACAAAC
EST: TTGATGCTGGAGAAGATGGACTTGGAAAAAATGCTCATTCTCTTAAGAAG GGATGCGATTGCTTGGGCTACATAAAATATTTTGATGCACATTTCACAAACEST: gi|211285882|gb|FL038895.1|FL038895
genomic: TTGATGCTGGAGAAGATGGACTTGGAAAAAATGCTCATTCTCTTAAGAAGgttattttat ... ttttgtgcagGGATGCGATTGCTTGGGCTACATAAAATATTTTGATGCACATTTCACAAAC
EST: TTGATGCTGGAGAAGATGGACTTGGAAAAAATGCTCATTCTCTTAAGAAG GGATGCGATTGCTTGGGCTACATAAAATATTTTGATGCACATTTCACAAACEST: gi|67028492|gb|CO457241.1|CO457241
genomic: TTGATGCTGGAGAAGATGGACTTGGAAAAAATGCTCATTCTCTTAAGAAGgttattttat ... ttttgtgcagGGATGCGATTGCTTGGGCTACATAAAATATTTTGATGCACATTTCACAAAC
EST: TTGATGCTGGAGAAGATGGACTTGGAAAAAATGCTCATTCTCTTAAGAAG GGATGCGATTGCTTGGGCTACATAAAATATTTTGATGCACATTTCACAAACEST: gi|211180988|gb|FL326379.1|FL326379
genomic: TTGATGCTGGAGAAGATGGACTTGGAAAAAATGCTCATTCTCTTAAGAAGgttattttat ... ttttgtgcagGGATGCGATTGCTTGGGCTACATAAAATATTTTGATGCACATTTCACAAAC
EST: TTGATGCTGGAGAAGATGGACTTGNAAAAAATGCTCATTCTCTTAANAAG GGATGCGATTTGCTTGGGCTACATAAAATATTTTTGATGEST: gi|67010284|gb|CO439033.1|CO439033
genomic: TTGATGCTGGAGAAGATGGACTTGGAAAAAATGCTCATTCTCTTAAGAAGgttattttat ... ttttgtgcagGGATGCGATT-GCTTGGGCTACATAAAATATTTT-GATG
EST: TTGATGCTGGAGAAGATGGACTTGGAAAAAATGCTCATTCTCTTAAGAAG GGATGCGATTGCTTGGGCTACATAAAATATTTTGATGCACATTTCACAAACEST: gi|211285878|gb|FL038891.1|FL038891
genomic: TTGATGCTGGAGAAGATGGACTTGGAAAAAATGCTCATTCTCTTAAGAAGgttattttat ... ttttgtgcagGGATGCGATTGCTTGGGCTACATAAAATATTTTGATGCACATTTCACAAAC
EST: TTGATGCTGGAGAAGATGGACTTGGAAAAAATGCTCATTCTCTTAAGAAG GGATGCGATTGCTTGGGCTACATAAAAT-TTT-GATGCACATTTCACAAACEST: gi|31348944|gb|CD433301.1|CD433301
genomic: TTGATGCTGGAGAAGATGGACTTGGAAAAAATGCTCATTCTCTTAAGAAGgttattttat ... ttttgtgcagGGATGCGATTGCTTGGGCTACATAAAATATTTTGATGCACATTTCACAAAC
EST: TTGATGCTGGAGAAGATGGACTTGGAAAAAATGCTCATTCTCTTAAGAAG GGATGCGATTGCTTGGGCTACATAAAATATTTTGATGCACATTTCACAAACEST: gi|47961763|gb|CN844472.1|CN844472
genomic: TTGATGCTGGAGAAGATGGACTTGGAAAAAATGCTCATTCTCTTAAGAAGgttattttat ... ttttgtgcagGGATGCGATTGCTTGGGCTACATAAAATATTTTGATGCACATTTCACAAAC
EST: TTGATGCTGGAGAAGATGGACTTGGAAAAAATGCTCATTCTCTTAAGAAG GGATGCGATTGCTTGGGCTACATAAAATATTTTGATGCACATTTCACAAACEST: gi|18661626|gb|BM501497.1|BM501497
genomic: TTGATGCTGGAGAAGATGGACTTGGAAAAAATGCTCATTCTCTTAAGAAGgttattttat ... ttttgtgcagGGATGCGATTGCTTGGGCTACATAAAATATTTTGATGCACATTTCACAAAC
EST: TTGATGCTGGAGAAGATGGACTTGGAAAAAATGCTCATTCTCTTAAGAAG GGATGCGATTGCTTGGGCTACATAAAATATTTTGATGCACATTTCACAAACEST: gi|211285879|gb|FL038892.1|FL038892
genomic: TTGATGCTGGAGAAGATGGACTTGGAAAAAATGCTCATTCTCTTAAGAAGgttattttat ... ttttgtgcagGGATGCGATTGCTTGGGCTACATAAAATATTTTGATGCACATTTCACAAAC
EST: TGATGCTGGAGAAGAATGGACTTGGAAAAAATGCTCATTCTCTTAAGAAG GGATGCGATTGCTTGGGCTACATAAAATATTTTGATGCACATTTCACAAACEST: gi|211285883|gb|FL038896.1|FL038896
genomic: TGATGCTGGAGAAG-ATGGACTTGGAAAAAATGCTCATTCTCTTAAGAAGgttattttat ... ttttgtgcagGGATGCGATTGCTTGGGCTACATAAAATATTTTGATGCACATTTCACAAAC
EST: TTGATGCTGGAGAAGATGGACTTGGAAAAAATGCTCATTCTCTTAAGAAG GGATGCGATTGCTTGGGCTACATAAAATATTTTGATGCACATTTCACAAACEST: gi|211285881|gb|FL038894.1|FL038894
genomic: TTGATGCTGGAGAAGATGGACTTGGAAAAAATGCTCATTCTCTTAAGAAGgttattttat ... ttttgtgcagGGATGCGATTGCTTGGGCTACATAAAATATTTTGATGCACATTTCACAAAC
EST: TTGATGCTGGAGAAGATGGACTTGGAAAAAATGCTCATTCTCTTAAGAAG GGATGCGATTGCTTGGGCTACATAAAATATTTTGATGCACATTTCACAAEST: gi|211285880|gb|FL038893.1|FL038893
genomic: TTGATGCTGGAGAAGATGGACTTGGAAAAAATGCTCATTCTCTTAAGAAGgttattttat ... ttttgtgcagGGATGCGATTGCTTGGGCTACATAAAATATTTTGATGCACATTTCACAA
EST: TTGATGCTGGAGAAGATGGACTTGGAAAAAATGCTCATTCTCTTAAGAAG GGATGCGATTGCTTGGGCTACATAAAATATTTTGATGCACATTTCACAAAC
genomic: TTGATGCTGGAGAAGATGGACTTGGAAAAAATGCTCATTCTCTTAAGAAGgttattttat ... ttttgtgcagGGATGCGATTGCTTGGGCTACATAAAATATTTTGATGCACATTTCACAAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTGTTCCTTATGGAGATCCAAGTGAACCACATTATCGCAAGAATGCATTTGATGCTGGAGAAGATGGACTTGGAAAAAATGCTCATTCTCTTAAGAAGgttattttattcagttcttgatgtgtatactttgacgttcaaaatttttctttgatttgactatgctctttaacctttttgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG