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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAGGTGTCAGATCCTGCAAAGGGTGTTTACGGAGCGGGCGCCCATTCAGACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAAgtaatacaccttgaaccgatgccttctctggcggttttattcggatctgtttcagccgggggtttcactcgtttggattcctgcag

Basic information

species Zea mays
transcript GRMZM2G147882_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G147882_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os01g09300.2 (Oryza sativa), 5'ss of exon 6
TAAGGTGTCAGATCCTGCAAAGGGTGTTTACGGAGCGGGCGCCCATTCAGACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAAgtaa-tacaccttgaaccgatgccttctctggcggtt---ttattcggatctgtttcagccggg-ggtttcactcgtttggattcctgcag
||| || ||| |||||||| |||| ||||  ||||| || |||||||| || || ||||| || ||||| ||||||||||||||||||||||| |||||||||| | || |||||| |||  |||| ||    | ||   | |||    |   ||  |       |||     ||  |  || |  |||||
TAAAGTATCAAATCCTGCAGAGGGAGTTTTTGGAGCAGGTGCCCATTCTGATTATGGCCTAATCACTCTACTGGCAACCGATGATGTAGTTGGTCTCCAAgtaaatgcatcttgaatcgacaccttatcaaatgtttcattgattttcgtgacttctaataaaatggtagttttccatctgaattatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78077655|gb|DV506089.1|DV506089
EST:     ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAA                         ATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG
genomic: ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAAgtaatacacc ... attcctgcagATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG
EST: gi|32924156|gb|CF028968.1|CF028968
EST:     ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAA                         ATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG
genomic: ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAAgtaatacacc ... attcctgcagATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG
EST: gi|32924444|gb|CF029256.1|CF029256
EST:     ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAA                         ATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG
genomic: ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAAgtaatacacc ... attcctgcagATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG
EST: gi|32858736|gb|CD998417.1|CD998417
EST:     ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAA                         ATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG
genomic: ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAAgtaatacacc ... attcctgcagATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG
EST: gi|32923806|gb|CF028618.1|CF028618
EST:     ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAA                         ATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG
genomic: ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAAgtaatacacc ... attcctgcagATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG
EST: gi|32924110|gb|CF028922.1|CF028922
EST:     ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAA                         ATATGCAAGGACAAGAACGCTCAGCCTCAGCTGTGGGAATACGTAGCTCCG
genomic: ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAAgtaatacacc ... attcctgcagATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG
EST: gi|71299018|gb|DR785501.1|DR785501
EST:     ATTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAA                         ATATGCAAGGACAAGAACGTTCAGCTTCAACTGTGGGAATACGTAGCTCCG
genomic: ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAAgtaatacacc ... attcctgcagATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG
EST: gi|32923874|gb|CF028686.1|CF028686
EST:     ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAA                         ATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG
genomic: ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAAgtaatacacc ... attcctgcagATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG
EST: gi|32924334|gb|CF029146.1|CF029146
EST:     ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAA                         ATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG
genomic: ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAAgtaatacacc ... attcctgcagATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG
EST: gi|32923638|gb|CF028450.1|CF028450
EST:     ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAA                         ATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG
genomic: ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAAgtaatacacc ... attcctgcagATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG
EST: gi|76287314|gb|DV026882.1|DV026882
EST:     ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAA                         ATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG
genomic: ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAAgtaatacacc ... attcctgcagATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG
EST: gi|71429425|gb|DR810475.1|DR810475
EST:     ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAA                         ATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG
genomic: ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAAgtaatacacc ... attcctgcagATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG
EST: gi|32858735|gb|CD998416.1|CD998416
EST:     GTAGTTGGGCTCCAA                         ATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG
genomic: GTAGTTGGGCTCCAAgtaatacacc ... attcctgcagATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG
EST: gi|32923912|gb|CF028724.1|CF028724
EST:     ACTACAGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAA                         ATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG
genomic: ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAAgtaatacacc ... attcctgcagATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG
EST: gi|32923869|gb|CF028681.1|CF028681
EST:     ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAA                         ATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG
genomic: ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAAgtaatacacc ... attcctgcagATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG
EST: gi|32923708|gb|CF028520.1|CF028520
EST:     ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAA                         ATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG
genomic: ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAAgtaatacacc ... attcctgcagATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG
EST: gi|32924079|gb|CF028891.1|CF028891
EST:     ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAA                         ATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG
genomic: ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAAgtaatacacc ... attcctgcagATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG
EST: gi|74241069|gb|DT648983.1|DT648983
EST:     ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAA                         ATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG
genomic: ACTACGGCCTGATAACTCTCCTGGCAACCGATGATGTAGTTGGGCTCCAAgtaatacacc ... attcctgcagATATGCAAGGACAAGAACGCTCAGCCTCAACTGTGGGAATACGTAGCTCCG