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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATGATATATATCTGCTTCCACCTGGTGAAGACCCAGAAGCATGCCAATCTTACTTGAGAATGCGGAATAGGGAAGGGAAATATAATCTAATGTTTGAGgtatatccgttttatacttttcctatcctaccaatgaattccagttttatgttttttctcccttataaatggaatttcagttttatgtttgatagctaca...

Basic information

species Zea mays
transcript GRMZM2G147430_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G147430_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os02g47860.2 (Oryza sativa), 5'ss of exon 6
TTATGATATATATCTGCTTCCACCTGGTGAAGACCCAGAAGCATGCCAATCTTACTTGAGAATGCGGAATAGGGAAGGGAAATATAATCTAATGTTTGAGgtatatccgttttatacttttcctatcc---taccaatgaattccagtttta--tgttttttctcccttataaatggaatttcagttttat-gtttgatagctaca
||||||||||||| ||||||| || || ||||| |||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||  |  |||  | |  |  |||      | |  |||  |    | | ||  || || || |     |  |||    | || |    ||  ||| |||      
TTATGATATATATTTGCTTCCTCCAGGCGAAGATCCAGAATCATGCCAATCTTATTTGAGAATGAGGAATAGGGAAGGGAAATATAATCTGATGTTTGAGgtatg-caatttattgcaatggctacataagtgcatatgtgtgatggatatagttggttgttttgttacaagaattacctctctggcccattattttatat-----

upper sequence: GRMZM2G147430_T02 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA02G14110.1 (Glycine max), 5'ss of exon 6
TTATGATATATATCTGCTTCCACCTGGTGAAGACCCAGAAGCATGCCAATCTTACTTGAGAATGCGGAATAGGGAAGGGAAATATAATCTAATGTTTGAGgtatatccgttttatacttttcctatcctaccaatgaattccagttttatgttttttctcccttat-aaatggaatttcagttttatgtttgatagctaca---
|||||| |||||||| || ||||| |||||||| |||||| | |||||||| || ||  | ||||| ||||  || |||||||| | ||| ||||||||||| |      || |||  |||  |||  |     ||    |   || |   ||   |      ||| | ||  | ||  |    | |  |||| | | | |   
TTATGACATATATCTTCTACCACCCGGTGAAGATCCAGAAACTTGCCAATCATATTTACGGATGCGAAATAAAGATGGGAAATACAGTCTCATGTTTGAGgtttggttccttgatatattttatattttg---gtgtgacctgattgtccattcaataggtgatatcagatttacttataagaatgtagttga-atcaaaatat

upper sequence: GRMZM2G147430_T02 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA01G09660.1 (Glycine max), 5'ss of exon 6
TTATGATATATATCTGCTTCCACCTGGTGAAGACCCAGAAGCATGCCAATCTTACTTGAGAATGCGGAATAGGGAAGGGAAATATAATCTAATGTTTGAGgtatatccgttttatacttttcctatcctaccaatgaattccagttttatgttttttctcccttataaatggaatttcagttttatgtttga-tagctaca-
|||||| |||||||| || ||||| |||||||| |||||| | || ||||| || ||  | ||||| |||| ||| |||||||| | ||| ||||||||||| |      ||  ||  |||  |||  |   | ||||    | | |    |   ||     |   ||||  | ||  |    |||  |||| |    | | 
TTATGACATATATCTTCTACCACCCGGTGAAGATCCAGAAACTTGTCAATCATATTTACGGATGCGAAATAAGGATGGGAAATACAGTCTCATGTTTGAGgtttggttccttgttatattttatattttg--attgaacctgattgtccattcaatttgtgatagcaaatttacttataagaatatagttgaattaaaatat

upper sequence: GRMZM2G147430_T02 (Zea mays), 5'ss of exon 6
lower sequence: AT1G26190.1 (Arabidopsis thaliana), 5'ss of exon 6
TTATGATATATATCTGCTTCCACCTGGTGAAGACCCAGAAGCATGCCAATCTTACTTGAGAATGCGGAATAGGGAAGGGAAATATAATCTAATGTTTGAGgtatatccgttttatacttttcctatcct-accaatgaattccagttttatgttttttctcccttataaa---tggaatttcagttttatgtttgatagctaca-------------------------------
 |||||||||||||| ||||| || |||||||| |||||  | |||||||| || ||||| ||||||||||  || || || || |  || ||||||||||| | | |    | || ||| | | | || | ||||  ||  |  ||  || | |       || | ||    |   |||   ||   ||| ||  || ||                                  
CTATGATATATATCTTCTTCCTCCGGGTGAAGATCCAGAGTCGTGCCAATCATATTTGAGGATGCGGAATAAAGATGGAAAGTACAGCCTTATGTTTGAGgtttgttcagagtttattttccatgttctcatcaat--atgactattcaatatctggaaaagctgacaatccctctgattctggtaagatgcttagtatctggtgaataactgtggttctggttttgacaaccag

upper sequence: GRMZM2G147430_T02 (Zea mays), 5'ss of exon 6
lower sequence: Vv17s0000g04650.t01 (Vitis vinifera), 5'ss of exon 5
TTATGATATATATCTGCTTCCACCTGGTGAAGACCCAGAAGCATGCCAATCTTACTTGAGAATGCGGAATAGGGAAGGGAAATATAATCTAATGTTTGAGgtatatccgttttatacttttcctatcctacc--aatga-attccagttttatgttttttctccctta-taaatggaatt--tcagttttatgtttgatagctaca
||||||||||||||| || || ||||||||||| || |||||||||||||| ||  |||| ||| |||| ||||| || ||||| ||||| ||||||||||| |  | ||| |   |||   ||     |    ||||| |||   |||| |  || |  |     || |||   ||| |  | ||| | |   |||||||     
TTATGATATATATCTTCTACCGCCTGGTGAAGATCCTGAAGCATGCCAATCATATCTGAGGATGAGGAACAGGGATGGCAAATACAATCTCATGTTTGAGgtttgactgttgtg-gcttaagcttcttaattggaatgatatttgtgtttgacattgtgacagatgtaataatcagaagtacttagtatcaccattgatag-----

upper sequence: GRMZM2G147430_T02 (Zea mays), 5'ss of exon 6
lower sequence: Vv01s0010g01080.t01 (Vitis vinifera), 5'ss of exon 5
TTATGATATATATCTGCTTCCACCTGGTGAAGACCCAGAAGCATGCCAATCTTACTTGAGAATGCGGAATAGGGAAGGGAAATATAATCTAATGTTTGAGgtatatccgttttatacttttcctatcctaccaatgaattcca--gttttatgttttttctcccttataaatggaatttcagttttatgtttgatagctaca
 |||||||| ||||| || || ||||||||||| || ||| | |||||||| || || || ||||||||||  || || ||||| | ||| |||||||||||  | ||| || | | ||         |    |    ||  |  ||  |  | ||| | |   |||    ||   || ||   |||   | | | |||  |
CTATGATATTTATCTTCTACCCCCTGGTGAAGATCCTGAATCTTGCCAATCATATTTAAGGATGCGGAATAAAGATGGAAAATACAGTCTCATGTTTGAGgtg-agccgcttcaaatttgaatctctttgttgacagttttaaaggtcctgagatttatatgtattactgctgctcttacatgattacaat-gtttgctgaa