1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CGAGGGACAAGCTTGATCTCTATCAGGAGCTGCTTGCAAGGCTCAAGGAAAGCCAGCGCTCCCTTGGGGAAGCTACTGCTGATGCTGAACTTCCCAAGAGgtggttcctgcttgaactgttttggggcctaattttcagtgataccgttttctcttactgtactggttcatcttttctctaatttgcag
species | Zea mays |
transcript | GRMZM2G147145_T03 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGCCAGCGCTCCCTTGGGGAAGCTACTGCTGATGCTGAACTTCCCAAGAG TGCTTCGGATAGAACCAAAGCAATGGGCCAAGTTTTATCAAAAGCAAGGGAEST: gi|5928665|gb|AW056062.1|AW056062
genomic: AGCCAGCGCTCCCTTGGGGAAGCTACTGCTGATGCTGAACTTCCCAAGAGgtggttcctg ... taatttgcagTGCTTCGGATAGAACCAAAGCAATGGGCCAAGTTTTATCAAAAGCAAGGGA
EST: AGCCAGCGATCCCTTGGGGAAGCTACTGCTGATGCTGAACTTCCCAAGAG TGCTTCGGATAGAACCAAAGCAATGGGCCAAGTTTTATCAAAAGCAAGGGAEST: gi|71771828|gb|DR969765.1|DR969765
genomic: AGCCAGCGCTCCCTTGGGGAAGCTACTGCTGATGCTGAACTTCCCAAGAGgtggttcctg ... taatttgcagTGCTTCGGATAGAACCAAAGCAATGGGCCAAGTTTTATCAAAAGCAAGGGA
EST: AGCCAGTGCTCCCTTGGGGAAGCTACTGCTGATGCTGAACTTCCCAAGAG TGCTTCGGATAGAACCAAAGCAATGGGCCAAGTTTTATCAAAAGCAAGGGAEST: gi|6973653|gb|AW438389.1|AW438389
genomic: AGCCAGCGCTCCCTTGGGGAAGCTACTGCTGATGCTGAACTTCCCAAGAGgtggttcctg ... taatttgcagTGCTTCGGATAGAACCAAAGCAATGGGCCAAGTTTTATCAAAAGCAAGGGA
EST: AGCCAGCGCTCCCTTGGGGAAGCTACTGCTGATGCTGAACTTCCCAAGAG TGCTTCGGATAGAACCAAAGCAATGGGCCAAGTTTTATCAAAAGCAAGGGA
genomic: AGCCAGCGCTCCCTTGGGGAAGCTACTGCTGATGCTGAACTTCCCAAGAGgtggttcctg ... taatttgcagTGCTTCGGATAGAACCAAAGCAATGGGCCAAGTTTTATCAAAAGCAAGGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAGGGACAAGCTTGATCTCTATCAGGAGCTGCTTGCAAGGCTCAAGGAAAGCCAGCGCTCCCTTGGGGAAGCTACTGCTGATGCTGAACTTCCCAAGAGgtggttcctgcttgaactgttttggggcctaattttcagtgataccgttttctcttactgtactggttcatcttttctctaatttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG