1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TCTTGTCAACATCAGAGTGGCGCACAATCTGATGCGGCTAATTGCTGAAGGCTTTGGAGAGGAGGATGAAGGTGCTGACAGTCAGCTAAGATCATCGGCTgtatgtactctcagcgccgaagtttcattgtagccactttcttaacgcaaaaaatgattaatgtagttaaatacaccttcaatcgtaatttcatcccccc...
species | Zea mays |
transcript | GRMZM2G146697_T03 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GCTTTGGAGAGGAGGATGAAGGTGCTGACAGTCAGCTAAGATCATCGGCT GTGGATTCATATCTCCGCATTGTCGGAGAGCCAAAGCTTCCTTCTTCGTTTEST: gi|9952284|gb|BE638867.1|BE638867
genomic: GCTTTGGAGAGGAGGATGAAGGTGCTGACAGTCAGCTAAGATCATCGGCTgtatgtactc ... gcttaaacagGTGGATTCATATCTCCGCATTGTCGGAGAGCCAAAGCTTCCTTCTTCGTTT
EST: GCTTTGGAGAGGAGGATGAAGGTGCTGACAGTCAGCTAAGATCATCGGCT GTGGATTCATATCTCCGCATTGTCGGAGAGCCAAAGCTTCCTTCTTCGTTT
genomic: GCTTTGGAGAGGAGGATGAAGGTGCTGACAGTCAGCTAAGATCATCGGCTgtatgtactc ... gcttaaacagGTGGATTCATATCTCCGCATTGTCGGAGAGCCAAAGCTTCCTTCTTCGTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTGTCAACATCAGAGTGGCGCACAATCTGATGCGGCTAATTGCTGAAGGCTTTGGAGAGGAGGATGAAGGTGCTGACAGTCAGCTAAGATCATCGGCTgtatgtactctcagcgccgaagtttcattgtagccactttcttaacgcaaaaaatgattaatgtagttaaatacaccttcaatcgtaatttcatcccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA