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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTAAGTTTGGTGCTGTATGCAAGTTCCATCATCCCAGGGAGCGAATAATTCCTACTCCCAATTGTGCACTGAGTCCATTAGGCCTACCTTTGCGCCCGgtaagagttagtatacatgtctttaagttaattatgctctctaagatacgtattgcaatttttggggtagatttgtctggctatcttggcttcgtctttt...

Basic information

species Zea mays
transcript GRMZM2G146514_T03
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G146514_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os11g28270.1 (Oryza sativa), 5'ss of exon 6
CTGTAAGTTTGGTGCTGTATGCAAGTTCCATCATCCCAGGGAGCGAATAATTCCTACTCCCAATTGTGCACTGAGTCCATTAGGCCTACCTTTGCGCCCGgtaagagttagtatacatgtctttaagttaattatgctctctaagatacgtatt----gcaatttttggggtagatttgtctggctatcttggcttcgtctttt
|||||||||||||||||||||||||||||||||||||| |||| |||| || |||||||| || |||||  ||||  ||||||| || ||  |||| |||||||| |    | |  ||  | ||        || | ||   |    | |||||    ||||  |      |  |||| |     |||  || ||| |  |   
CTGTAAGTTTGGTGCTGTATGCAAGTTCCATCATCCCAAGGAGAGAATTATCCCTACTCCAAACTGTGCGTTGAGCTCATTAGGTCTTCCACTGCGTCCGgtaagggagtcttt-tatagcattgtacaccctaagttcctaagttcatgtattcttagcaacatggtcatttaattttttgctgtatgctgccttagctt---

upper sequence: GRMZM2G146514_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os12g21700.1 (Oryza sativa), 5'ss of exon 6
CTGTAAGTTTGGTGCTGTATGCAAGTTCCATCATCCCAGGGAGCGAATAATTCCTACTCCCAATTGTGCACTGAGTCCATTAGGCCTACCTTTGCGCCCGgtaagagttagtatacatgtctttaagttaattatgctctctaagatacgtattgcaatttttggggtagatttgtctggctatcttggcttcgtctttt----
|||||||||||||||||| |||||||| ||||| |||| ||||||| |  | ||| |||| || |||||| ||| | || | || || ||  | |||||||||||  ||  | |  ||||  | || ||  | | ||    |    |  | |        |||   || |     ||  || || ||  || | | | ||    
CTGTAAGTTTGGTGCTGTTTGCAAGTTTCATCACCCCAAGGAGCGACTGGTACCTGCTCCAAACTGTGCATTGAATTCACTTGGTCTTCCACTACGCCCGgtaaggttttttttttatgt--tgaaatttctcaagccaaattttgtgaggaccattccatttatagtgg--ccatcatgcaattttttctgcatgtgttgtct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19770493|gb|BQ035214.1|BQ035214
EST:     TTCCTACTCCCAATTGTGCACTGAGTCCATTAGGCCTACCTTTGCGCCCG                         GGAGAGCCAATATGCAGTTTCTACAATCGCTACGGCATGTGCAAGTTCGGT
genomic: TTCCTACTCCCAATTGTGCACTGAGTCCATTAGGCCTACCTTTGCGCCCGgtaagagtta ... ccgctcacagGGAGAGCCAATATGCAGTTTCTACAATCGCTACGGCATGTGCAAGTTCGGT
EST: gi|20300460|gb|BQ163403.1|BQ163403
EST:     TTCCTACTCCCAATTGTGCACTGAGTCCATTAGGCCTACCTTTGCGCCCG                         GGAGAGCCAATATGCAGTTTCTACAATCGCTACGGCATGTGCAAGTTCGGT
genomic: TTCCTACTCCCAATTGTGCACTGAGTCCATTAGGCCTACCTTTGCGCCCGgtaagagtta ... ccgctcacagGGAGAGCCAATATGCAGTTTCTACAATCGCTACGGCATGTGCAAGTTCGGT
EST: gi|87152782|gb|DY397571.1|DY397571
EST:     CTACTCCCAATTGTGCACTGAGTCCATTAGGCCTACCTTTGCGCCCG                         GGAGAGCCAATATGCAGTTTCTACAATCGCTACGGCATGTGCAAGTTCGGT
genomic: CTACTCCCAATTGTGCACTGAGTCCATTAGGCCTACCTTTGCGCCCGgtaagagtta ... ccgctcacagGGAGAGCCAATATGCAGTTTCTACAATCGCTACGGCATGTGCAAGTTCGGT
EST: gi|16926943|gb|BM080011.1|BM080011
EST:     TTCCTACTCCCAATTGTGCACTGAGTCCATTAGGCCTACCTTTGCGCCCG                         GGAGAGCCAATATGCAGTTTCTACAATCGCTACGGCATGTGCAAGTTCGGT
genomic: TTCCTACTCCCAATTGTGCACTGAGTCCATTAGGCCTACCTTTGCGCCCGgtaagagtta ... ccgctcacagGGAGAGCCAATATGCAGTTTCTACAATCGCTACGGCATGTGCAAGTTCGGT
EST: gi|113704058|gb|EE681562.1|EE681562
EST:     TTCCTACTCCCAATTGTGCACTGAGTCCATTAGGCCTACCTTTGCGCCCG                         GGAGAGCCAATATGCAGTTTCTACAATCGCTACGGCATGTGCAAGTTCGGT
genomic: TTCCTACTCCCAATTGTGCACTGAGTCCATTAGGCCTACCTTTGCGCCCGgtaagagtta ... ccgctcacagGGAGAGCCAATATGCAGTTTCTACAATCGCTACGGCATGTGCAAGTTCGGT