Sequence
atgc intronic sequence ATGC exonic sequenceAGATGGCCCAAAGGGATTTTTTCGTGGCACTGGGGCCACACTGTGTCGCGAGGTTCCTTTCTATGTTGCTGGAATGTGCCTCTATGCAGAAGCTAAGAAGgtatcctcgttttgaactgattcctggtttcaccagaccttcaaagtggcattcacaaatccctatgttgttaacaagtcagctaccattcttaactacc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G146378_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os12g01240.1 (Oryza sativa), 5'ss of exon 6
AGATGGCCCAAAGGGATTTTTTCGTGGCACTGGGGCCACACTGTGTCGCGAGGTTCCTTTCTATGTTGCTGGAATGTGCCTCTATGCAGAAGCTAAGAAGgtatcctcgttttgaactgattcctggtttcaccagaccttcaaagtggcattcacaaatccctatgttgttaac----aagt-cagctaccattcttaactacc
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AGATGGTCCAAAGGGCTTCTTCCGTGGCACTGGGGCCACTCTTTGCCGAGAGGTTCCTTTCTATGTTGCTGGAATGTGTCTTTATGCAGAAGCTAAAAAGgtattgtgagttcttattgtttctttgg---accataccttaaaattggttttcttccatctatattttgttgactgaaaggtgcagtgagctgcctttgttt--
upper sequence: GRMZM2G146378_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os11g01270.1 (Oryza sativa), 5'ss of exon 6
AGATGGCCCAAAGGGATTTTTTCGTGGCACTGGGGCCACACTGTGTCGCGAGGTTCCTTTCTATGTTGCTGGAATGTGCCTCTATGCAGAAGCTAAGAAGgtatcctcgttttgaactgattcctggtttcaccagaccttcaaagtggcattcacaaatccctatgttgttaacaagtcagctaccattcttaactacc-----
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AGATGGTCCAAAGGGCTTCTTCCGAGGCACTGGAGCCACTCTTTGCCGAGAGGTTCCTTTCTATGTTGCTGGAATGTGTCTTTATGCAGAAGCTAAAAAGgtattgtgagttcttattgtttctttgg---actgtaccttaaaattggttttctttcatctatattttgttgactgaaaggtctgcagtg--agctgcctttgt
upper sequence: GRMZM2G146378_T02 (Zea mays), 5'ss of exon 2
lower sequence: Vv13s0019g03870.t01 (Vitis vinifera), 5'ss of exon 6
AGATGGCCCAAAGGGATTTTTTCGTGGCACTGGGGCCACACTGTGTCGCGAGGTTCCTTTCTATGTTGCTGGAATGTGCCTCTATGCAGAAGCTAAGAAGgtatcctcgttttgaactgattcctggtttcaccagaccttca-----aagtggcattcac---aaatccctatgttgttaacaagtcagctaccattc-ttaactacc---------------------------------
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AGATGGTGTTAAGGGTTTCTTTCGTGGGACTGGTGCCACTCTTTGTAGGGAGGTTCCATTCTATGTTGCGGGCATGGGGCTCTATGCCGAGTCCAAAAAGgtacgagttttctatgtcattctctctctctctcacacacacgcgcgcacatggctcttttgttaaaatgatgcattattgctagagcttttgtagatcactgactttcgtcgttgtctttgcctttgtctgcttttctaagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|16927206|gb|BM080275.1|BM080275EST: AGGTTCCTTTCTATGTTGCTGGAATGTGCCTCTATGCAGAAGCTAAGAAG GCAGCACAGCATGTTTTGAGGAGAGACTTGGAAGCATGGGAAGTAGTGGCA
genomic: AGGTTCCTTTCTATGTTGCTGGAATGTGCCTCTATGCAGAAGCTAAGAAGgtatcctcgt ... tgttctgcagGCAGCACAGCATGTTTTGAGGAGAGACTTGGAAGCATGGGAAGTAGTGGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGATGGCCCAAAGGGATTTTTTCGTGGCACTGGGGCCACACTGTGTCGCGAGGTTCCTTTCTATGTTGCTGGAATGTGCCTCTATGCAGAAGCTAAGAAGgtatcctcgttttgaactgattcctggtttcaccagaccttcaaagtggcattcacaaatccctatgttgttaacaagtcagctaccattcttaactacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG