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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttcttatgcacgagcaataactgcatgattttttttccacatcgtagatagttgcttccatttgtgtctcccggtattcttgatttacatatcgatatcaatgttcttaattctgctttgtgtatcatttgagatgtgcatggtattgtag

Basic information

species Zea mays
transcript GRMZM2G146206_T04
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G146206_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os01g62420.5 (Oryza sativa), 5'ss of exon 5
AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttcttatgcacgagcaataactgcatgatt------ttttttccacat----------cgtaga----tagttgcttccatttgtgtctcccggtattcttgatttacatatcgatatcaatgttcttaattctgctt-tgtgtatcatttgagatgtgcatggtattgtag
| || ||||| |||||||| ||| |||| ||||||||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||||||||||  ||||| |   | ||||||| ||  || ||||      ||   | |||||          | || |    ||   | ||     | | |||   |   |||||||   |    | | || |    |    ||||||| |  |  | || |||||| || ||||||  |||    
AGAAGATATCCGATTGGACCAATGTTGTTTTGGCATATGAACCAGTTTGGGCCATTGGAACCGGCAAGGTTGCAACCCCTGCTCAGGCTCAGGAGgtattccttctaacata-gagcaattacatcacgattagcatgttcccttcacatttatctgcctcataaaccaatatgggttttttcctatatctaatgtctttcttgaccgatgcct-ggtacctgattctgcaattctgttcattcgaattatttgaaatatgcatgacattag--

upper sequence: GRMZM2G146206_T02 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA15G04290.1 (Glycine max), 5'ss of exon 6
AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttcttatgcacgagcaataactgcatgattttttttccacatcgtagatagttgcttccatttgtgtctcccggtattcttgatttacatatcgatatcaatgttcttaattctgctttgtgtatcatttgagatgtgcatggtattgtag
  ||||||||| |||||   ||| | || ||||| || || ||||||||||| ||||| || || || ||||| ||||||||||||||||| |||||||   | | |||          |||| | |  ||| ||||        ||  | | |||||| |   | ||        | || ||  |||   | |  || | | |||||| |                                          
CTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGGCCATTGGAACAGGAAAGGTTGCTACTCCTGCTCAGGCTCAAGAGgtatgcttgcctatattt---tgttaacagtacaattgttttg-------gtgaaaacttgcttgccactatgc-------tgttttttttttgtgtgtgaattttattgttctcac-----------------------------------------

upper sequence: GRMZM2G146206_T02 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA13G41120.1 (Glycine max), 5'ss of exon 6
AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttcttatgcacgagcaataactgcatgattttttttccacatcgtagatagttgcttccatttgtgtctcccggtattcttgatttacatatcgatatca-atgttcttaattctgctttgtgtatcatttgagatgtgcatggtattgtag
  ||||||||| |||||   ||| | || ||||| ||||| ||||||||||| ||||| || || || ||||||||||||||||||||||| |||||||   |   |||          |||| | |  ||| ||||        ||  | | |||||  |  || ||  |     |||| |||| ||   ||| | | ||| || ||                                              
CTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTATGAGCCAGTTTGGGCCATTGGAACAGGAAAGGTTGCAACTCCTGCTCAGGCTCAAGAGgtatgcttgtctatattt---tgttaacagtactattgttttg-------gtgaaaacttgctcgccattatgg-tgattatatttttgaattt--tattgttctcacatatt----------------------------------------------

upper sequence: GRMZM2G146206_T02 (Zea mays), 5'ss of exon 6
lower sequence: Vv06s0004g04800.t01 (Vitis vinifera), 5'ss of exon 6
AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttcttatgcacgagcaataactgcatgattttttttccacatcgtagatagttgcttccat-ttgtgtctcccggtattcttgatttacatatcgatatcaatgttcttaattctgctttgtgtatcatttgagatgtgcatggtattgtag
||||| | |||   |||   |||||||| ||||| |||||||| |||||||| ||||| || || || |||||||| ||||||||||| ||||| |||   ||          | |   | | || ||       ||  ||  || |  | |      |  ||  ||     |  | |||  || | |||  | |  | | |    |   ||||                                        
AAAAAGTGTCAAGCTGGGATAATATTGTTTTGGCTTATGAACCTGTTTGGGCCATTGGCACTGGAAAGGTTGCAACCCCTGCTCAGGCACAGGAAgtaagtct----------gggttgttattgaat-------ttgtcatttcattaacaaggatctttatgctggaaagcatgttatagttcagttat-tgttaa-accggaatctctaat----------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16919933|gb|BM074427.1|BM074427
EST:     TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|150037302|gb|DY843516.1|DY843516
EST:     TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|33101583|gb|CF061543.1|CF061543
EST:     ACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: ACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|38568995|gb|CF974880.1|CF974880
EST:     TTTGGGCTATTGGTACCGGCAAGGTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|32936387|gb|CF041206.1|CF041206
EST:     CAAAGTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTCTGAGAAAGTGGCTCCACTTCAATGTTAGCCCTGCAGTT
genomic: CAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|14243822|gb|BG841520.2|BG841520
EST:     TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|67021888|gb|CO450637.1|CO450637
EST:     TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|24767602|gb|CA402746.1|CA402746
EST:     TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|149005098|gb|EE039627.2|EE039627
EST:     TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTTTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|24769561|gb|CA404690.1|CA404690
EST:     TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|149097485|gb|EE183357.2|EE183357
EST:     TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|30591364|gb|CD052336.1|CD052336
EST:     TTTGGGCTATTGGTACCGGCAAGGTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTCTGAAAAAGTGGCTCCNCTCCAATGTTAGCC
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCC
EST: gi|71330644|gb|DR802095.1|DR802095
EST:     TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|38229733|gb|CF920046.1|CF920046
EST:     TTTGGGCTATTGGTACCGGCAAGGTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|16927318|gb|BM080387.1|BM080387
EST:     TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|32851161|gb|CD990842.1|CD990842
EST:     TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|149105683|gb|EE291241.2|EE291241
EST:     TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|149095398|gb|EE181040.2|EE181040
EST:     TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|32850309|gb|CD989990.1|CD989990
EST:     ACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: ACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|5791027|gb|AI977819.1|AI977819
EST:     TGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTCTGAGAAAGTGGCTCCCCTCCAATGTTAGCCCTGCAGTT
genomic: TGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|71436570|gb|DR817620.1|DR817620
EST:     TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|101388915|gb|EB816439.1|EB816439
EST:     TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTTTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|31352539|gb|CD436896.1|CD436896
EST:     TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|149097486|gb|EE183358.2|EE183358
EST:     TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|149005099|gb|EE039628.2|EE039628
EST:     TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|32931721|gb|CF036533.1|CF036533
EST:     ACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: ACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|37361179|gb|CF602468.1|CF602468
EST:     TTTGGGCTATTGGTACCGGCAAGGTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|148971477|gb|EE022172.2|EE022172
EST:     TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|37361339|gb|CF602628.1|CF602628
EST:     TTTGGGCTATTGGTACCGGCAAGGTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|34391231|gb|CF384459.1|CF384459
EST:     TTTGGGCTATTGGTACCGGCAAGGTTGCAACTCCTGCTCAGGCTCAGGAN                         GTTCATGATGGTCTGAGAAAGTGGCTCCNCTCCAATGTTAGCCCTGCAGTT
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|6012502|gb|AW061939.1|AW061939
EST:     TTTGGGCTATTGGTACCGGCAAGGTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|110517584|gb|EE022171.1|EE022171
EST:     TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|71757929|gb|DR955866.1|DR955866
EST:     TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|78077610|gb|DV506044.1|DV506044
EST:     TTTGGGCTATTGGTACCGGCAAAGTTGCCACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|33770896|gb|CF273190.1|CF273190
EST:     TTTGGGCTATTGGTACCGGCAAGGTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|148995363|gb|EE034577.2|EE034577
EST:     TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|9743048|gb|BE519196.1|BE519196
EST:     TTTGGGCTATTGGTACCGGCAAGGTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|33094011|gb|CF054005.1|CF054005
EST:     TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|32909130|gb|CF013942.1|CF013942
EST:     TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|32930797|gb|CF035609.1|CF035609
EST:     TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|67017127|gb|CO445876.1|CO445876
EST:     TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCANGAG                         GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|211291624|gb|FL459848.1|FL459848
EST:     TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|32941523|gb|CF046342.1|CF046342
EST:     ACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: ACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|31360263|gb|CD444620.1|CD444620
EST:     TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|71330645|gb|DR802096.1|DR802096
EST:     TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|148995362|gb|EE034576.2|EE034576
EST:     TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTTTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|37361129|gb|CF602418.1|CF602418
EST:     TTTGGGCTATTGGTACCGGCAAGGTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTCTGAGAAAGTGGCTCTACTCCAATGTTAGCCCTGCAGTT
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|34391269|gb|CF384497.1|CF384497
EST:     TTTGGGCTATTGGTACCGGCAAGGTTGCAACTCCTGCTCAGGCCCAGGAG                         GTTCATGATGGTCTGA
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGA
EST: gi|31351356|gb|CD435713.1|CD435713
EST:     TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|83278303|gb|DV942311.1|DV942311
EST:     TTTGGGCTATTGGTACCGGCAAGGTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|33771263|gb|CF273442.1|CF273442
EST:     TTTGGGCTATTGGTACCGGCAAGGTTGCAACTCCTGCTCAGGCTCAGGAN                         GTTCATGATGGTCTGA
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGA
EST: gi|38229553|gb|CF919866.1|CF919866
EST:     TTTGGGCTATTGGTACCGGCAAGGTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTCTGA
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGA
EST: gi|31354853|gb|CD439210.1|CD439210
EST:     TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|61118911|gb|DN559872.1|DN559872
EST:     TTTGGGCTATTGGTACCGGCAAGGTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|16927255|gb|BM080324.1|BM080324
EST:     TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|18178250|gb|BM379460.1|BM379460
EST:     TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|67015285|gb|CO444034.1|CO444034
EST:     TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|33093246|gb|CF053240.1|CF053240
EST:     ACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: ACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|211297519|gb|FL438922.1|FL438922
EST:     TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|31628067|gb|CD526427.1|CD526427
EST:     TTTGGGCTATTGGTACCGGCAAGGTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|110960987|gb|EE181039.1|EE181039
EST:     TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTTTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: TTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 46 (downstream exon)
Score: 80

AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTTGCTGAATTGACAAGGATAATTTATGGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 130

AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTTGCTGAATTGACAAGGATAATTTATGGAG


Block sizes: 49 (upstream exon), 45 (downstream exon)
Score: 76

AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTTGCTGAATTGACAAGGATAATTTATGGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 350

AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... ggtattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTTGCTGAATTGACAAGGATAATTTATGGAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttcttatgcacgagcaataactgcatgattttttttccacatcgtagatagttgcttccatttgtgtctcccggtattcttgatttacatatcgatatcaatgttcttaattctgctttgtgtatcatttgagatgtgcatggtattgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG