1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ACTTGAAGAGCTCATTTATTCTAGGCAAATATATAAACAGCAGCTTTCCAACATTGCAGTCTCTGGAAAAATAGAGAGGCGTTACTTTGAAGGTGTGCAGgtattttcttagccatagaagtgaaagaaacgcaacaccaggatattaaattgcttgtcttgacctctagtatcaatgggttgtatatttatataggaag...
species | Zea mays |
transcript | GRMZM2G146041_T02 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ACATTGCAGTCTCTGGAAAAATAGAGAGGCGTTACTTTGAAGGTGTGCAG GATGACAAGAAATTTCAAGGTGAGCTCTTTGGGATCTGCAATCTTTTCCGTEST: gi|19821907|gb|BQ047931.1|BQ047931
genomic: ACATTGCAGTCTCTGGAAAAATAGAGAGGCGTTACTTTGAAGGTGTGCAGgtattttctt ... tctgatttagGATGACAAGAAATTTCAAGGTGAGCTCTTTGGGATCTGCAATCTTTTCCGT
EST: ACATTGCAGTCTCTGGAAAAATAGAGAGGCGTTACTTTGAAGGTGTGCAG GATGACAAGAAATTTCAAGGTGAGCTCTTTGGGATCTGCAATCTTTTCCGTEST: gi|67042856|gb|CO469111.1|CO469111
genomic: ACATTGCAGTCTCTGGAAAAATAGAGAGGCGTTACTTTGAAGGTGTGCAGgtattttctt ... tctgatttagGATGACAAGAAATTTCAAGGTGAGCTCTTTGGGATCTGCAATCTTTTCCGT
EST: ACATTGCAGTCTCTGGAAAAATAGAGAGGCGTTACTTTG-A-------AG GATGACAAGAAATTTCAAGGTGAGCTCTTTGGGATCTGCAATCTTTTCCGTEST: gi|19351728|gb|BM896260.1|BM896260
genomic: ACATTGCAGTCTCTGGAAAAATAGAGAGGCGTTACTTTGAAGGTGTGCAGgtattttctt ... tctgatttagGATGACAAGAAATTTCAAGGTGAGCTCTTTGGGATCTGCAATCTTTTCCGT
EST: ACATTGCAGTCTCTGGAAAAATAGAGAGGCGTTACTTTGAAGGTGTGCAG GATGACAAGAAATTTCAAGGTGAGCTCTTTGGGATCTGCAATCTTTTCCGTEST: gi|19351269|gb|BM895801.1|BM895801
genomic: ACATTGCAGTCTCTGGAAAAATAGAGAGGCGTTACTTTGAAGGTGTGCAGgtattttctt ... tctgatttagGATGACAAGAAATTTCAAGGTGAGCTCTTTGGGATCTGCAATCTTTTCCGT
EST: ACATTGCAGTCTCTGGAAAAATAGAGAGGCGTTACTTTGAAGGTGTGCAG GATGACAAGAAATTTCAAGGTGAGCTCTTTGGGATCTGCAATCTTTTCCGTEST: gi|19821942|gb|BQ047966.1|BQ047966
genomic: ACATTGCAGTCTCTGGAAAAATAGAGAGGCGTTACTTTGAAGGTGTGCAGgtattttctt ... tctgatttagGATGACAAGAAATTTCAAGGTGAGCTCTTTGGGATCTGCAATCTTTTCCGT
EST: ACATTGCAGTCTCTGGAAAAATAGAGAGGCGTTACTTTGAAGGTGTGCAG GATGACAAGAAATTTCAAGGTGAGCTCTTTGGGATCTGCAATCTTTTCCGT
genomic: ACATTGCAGTCTCTGGAAAAATAGAGAGGCGTTACTTTGAAGGTGTGCAGgtattttctt ... tctgatttagGATGACAAGAAATTTCAAGGTGAGCTCTTTGGGATCTGCAATCTTTTCCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTTGAAGAGCTCATTTATTCTAGGCAAATATATAAACAGCAGCTTTCCAACATTGCAGTCTCTGGAAAAATAGAGAGGCGTTACTTTGAAGGTGTGCAGgtattttcttagccatagaagtgaaagaaacgcaacaccaggatattaaattgcttgtcttgacctctagtatcaatgggttgtatatttatataggaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG