1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
ATTAATGCCTGGGTTTGATCCCGAGATTGCAAAATTGGCGCAGAGGATTCTTATTAGTCCTCGTAAAATTGACTATCACACTGGTGTTTTTGCAAGCAAGgtaaagttaagctcaactcaatctttttaatgatgtgtaatcttccagcatgattgtataattatacctcaaagtattcatgtctctag
species | Zea mays |
transcript | GRMZM2G145595_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTATTAGTCCTCGTAAAATTGACTATCACACTGGTGTTTTTGCAAGCAAG ATTACCCCAGCAAAGGATGGTAAGCCTGTTTTGATTGAGCTGATTGATGCTEST: gi|149070832|gb|EE159242.2|EE159242
genomic: TTATTAGTCCTCGTAAAATTGACTATCACACTGGTGTTTTTGCAAGCAAGgtaaagttaa ... atgtctctagATTACCCCAGCAAAGGATGGTAAGCCTGTTTTGATTGAGCTGATTGATGCT
EST: TTATTAGTCCTCGTAAAATTGACTATCACACTGGTGTTTTTGCAAGCAAG ATTACCCCAGCAAAGGATGGTAAGCCTGTTTTGATTGAGCTGATTGATGCEST: gi|89249248|gb|DY621034.1|DY621034
genomic: TTATTAGTCCTCGTAAAATTGACTATCACACTGGTGTTTTTGCAAGCAAGgtaaagttaa ... atgtctctagATTACCCCAGCAAAGGATGGTAAGCCTGTTTTGATTGAGCTGATTGATGC
EST: TTATTAGTCCTCGTAAAATTGACTATCACACTGGTGTTTTTGCAAGCAAG ATTACCCCAGCAAAGGATGGTAACCCTGTTTTGATTGAGCTGATTGATGCT
genomic: TTATTAGTCCTCGTAAAATTGACTATCACACTGGTGTTTTTGCAAGCAAGgtaaagttaa ... atgtctctagATTACCCCAGCAAAGGATGGTAAGCCTGTTTTGATTGAGCTGATTGATGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTAATGCCTGGGTTTGATCCCGAGATTGCAAAATTGGCGCAGAGGATTCTTATTAGTCCTCGTAAAATTGACTATCACACTGGTGTTTTTGCAAGCAAGgtaaagttaagctcaactcaatctttttaatgatgtgtaatcttccagcatgattgtataattatacctcaaagtattcatgtctctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG