1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TTTGATGGGTTCATTGACCTTGATGCATATGATACAATAGCAATGAAGATCAAAGGGGATGGAAGATGCTACATATCTACAgtgtgttttctcacacaagactcactcttgaatattaaatgtccagtcagtattgttcttcagaatctgaaatcttaataagtacag
species | Zea mays |
transcript | GRMZM2G144716_T06 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATACAATAGCAATGAAGATCAAAGGGGATGGAAGATGCTACATATCTACA ATATACACGGAGAATTGGGTGAATTCACCCGGGCAACAAGAAGACAACTCGEST: gi|76917524|gb|DV166879.1|DV166879
genomic: ATACAATAGCAATGAAGATCAAAGGGGATGGAAGATGCTACATATCTACAgtgtgttttc ... ataagtacagATATACACGGAGAATTGGGTGAATTCACCCGGGCAACAAGAAGACAACTCG
EST: ATACAATAGCAATGAAGATCAAAGGGGATGGAAGATGCTACATATCTACA ATATACACGGAGAATTGGGTGAATTCACCCGGGCAACAAGAAGACAACTCGEST: gi|89248889|gb|DY620675.1|DY620675
genomic: ATACAATAGCAATGAAGATCAAAGGGGATGGAAGATGCTACATATCTACAgtgtgttttc ... ataagtacagATATACACGGAGAATTGGGTGAATTCACCCGGGCAACAAGAAGACAACTCG
EST: ATACAATAGCAATGAAGATCAAAGGGGATGGAAGATGCTACATATCTACA ATATACACGGAGAATTGGGTGAATTCACCCGGGCAACAAGAAGACAACTCGEST: gi|211417239|gb|FL450863.1|FL450863
genomic: ATACAATAGCAATGAAGATCAAAGGGGATGGAAGATGCTACATATCTACAgtgtgttttc ... ataagtacagATATACACGGAGAATTGGGTGAATTCACCCGGGCAACAAGAAGACAACTCG
EST: ATACAATAGCAATGAAGATCAAAGGGGATGGAAGATGCTACATATCTACA ATATACACGGAGAATTGGGTGAATTCACCCGGGCAACAAGAAGACAACTCG
genomic: ATACAATAGCAATGAAGATCAAAGGGGATGGAAGATGCTACATATCTACAgtgtgttttc ... ataagtacagATATACACGGAGAATTGGGTGAATTCACCCGGGCAACAAGAAGACAACTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTGATGGGTTCATTGACCTTGATGCATATGATACAATAGCAATGAAGATCAAAGGGGATGGAAGATGCTACATATCTACAgtgtgttttctcacacaagactcactcttgaatattaaatgtccagtcagtattgttcttcagaatctgaaatcttaataagtacag
- - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG