1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATACACGGAGAATTGGGTGAATTCACCCGGGCAACAAGAAGACAACTCGTGGCAGGCTTTTGTGTACATACCTCCTCAAGACAGATGGGAAGTCTTGAAGgtaaattatcgttttctatcgatcaacatccagagtatgtgactttttttagtgatgaagaaaccgttcccattccatacag
species | Zea mays |
transcript | GRMZM2G144716_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GGCAGGCTTTTGTGTACATACCTCCTCAAGACAGATGGGAAGTCTTGAAG ATCCCTCTTGATCGCTATTTACCCACATGGAGAGGAAATGTGATCCAGGCAEST: gi|89248889|gb|DY620675.1|DY620675
genomic: GGCAGGCTTTTGTGTACATACCTCCTCAAGACAGATGGGAAGTCTTGAAGgtaaattatc ... ttccatacagATCCCTCTTGATCGCTATTTACCCACATGGAGAGGAAATGTGATCCAGGCA
EST: GGCAGGCTTTTGTGTACATACCTCCTCAAGACAGATGGGAAGTCTTGAAG ATCCCTCTTGATCGCTATTTACCCACATGGAGAGGAAATGTGATCCAGGCAEST: gi|149100664|gb|EE186752.2|EE186752
genomic: GGCAGGCTTTTGTGTACATACCTCCTCAAGACAGATGGGAAGTCTTGAAGgtaaattatc ... ttccatacagATCCCTCTTGATCGCTATTTACCCACATGGAGAGGAAATGTGATCCAGGCA
EST: GCAGGCTTTTTGTGTACATACCTCCTCAAGACAGATGGGAAGTCTTGAAG ATCCCTCTTGATCGCTATTTACCCACATGGAGAGGAAATGTGATCCAGGCAEST: gi|71429695|gb|DR810745.1|DR810745
genomic: GCAGGC-TTTTGTGTACATACCTCCTCAAGACAGATGGGAAGTCTTGAAGgtaaattatc ... ttccatacagATCCCTCTTGATCGCTATTTACCCACATGGAGAGGAAATGTGATCCAGGCA
EST: GGCAGGCTTTTGTGTACATACCTCCTCAAGACAGATGGGAAGTCTTGAAG ATCCCTCTTGATCGCTATTTACCCACATGGAGAGGAAATGTGATCCAGGCAEST: gi|78081291|gb|DV509703.1|DV509703
genomic: GGCAGGCTTTTGTGTACATACCTCCTCAAGACAGATGGGAAGTCTTGAAGgtaaattatc ... ttccatacagATCCCTCTTGATCGCTATTTACCCACATGGAGAGGAAATGTGATCCAGGCA
EST: GGCAGGCTTTTGTGTACATACCTCCTCAAGACAGATGGGAAGTCTTGAAG ATCCCTCTTGATCGCTATTTACCCACATGGAGAGGAAATGTGATCCAGGCAEST: gi|78081290|gb|DV509702.1|DV509702
genomic: GGCAGGCTTTTGTGTACATACCTCCTCAAGACAGATGGGAAGTCTTGAAGgtaaattatc ... ttccatacagATCCCTCTTGATCGCTATTTACCCACATGGAGAGGAAATGTGATCCAGGCA
EST: GGCAGGCTTTTGTGTACATACCTCCTCAAGACAGATGGGAAGTCTTGAAG ATCCCTCTTGATCGCTATTTACCCACATGGAGAGGAAATGTGATCCAGGCAEST: gi|60340500|gb|DN207473.1|DN207473
genomic: GGCAGGCTTTTGTGTACATACCTCCTCAAGACAGATGGGAAGTCTTGAAGgtaaattatc ... ttccatacagATCCCTCTTGATCGCTATTTACCCACATGGAGAGGAAATGTGATCCAGGCA
EST: GGCAGGCTTTTGTGTACATACCTCCTCAAGACAGATGGGAAGTCTTGAAG ATCCCTCTTGATCGCTATTTACCCACATGGAGAGGAAATGTGATCCAGGCAEST: gi|76917524|gb|DV166879.1|DV166879
genomic: GGCAGGCTTTTGTGTACATACCTCCTCAAGACAGATGGGAAGTCTTGAAGgtaaattatc ... ttccatacagATCCCTCTTGATCGCTATTTACCCACATGGAGAGGAAATGTGATCCAGGCA
EST: GGCAGGCTTTTGTGTACATACCTCCTCAAGACAGATGGGAAGTCTTGAAG ATCCCTCTTGATCGCTATTTACCCACATGGAGAGGAAATGTGATCCAGGCAEST: gi|37379589|gb|CF626540.1|CF626540
genomic: GGCAGGCTTTTGTGTACATACCTCCTCAAGACAGATGGGAAGTCTTGAAGgtaaattatc ... ttccatacagATCCCTCTTGATCGCTATTTACCCACATGGAGAGGAAATGTGATCCAGGCA
EST: GGCAGGCTTTTGTGTACATACCTCCTCAAGACAGATGGGAAGTCTTGAAG ATCCCTCTTGATCGCTATTTACCCACATGGAGAGGAAATGTGATCCAGGCAEST: gi|71429835|gb|DR810885.1|DR810885
genomic: GGCAGGCTTTTGTGTACATACCTCCTCAAGACAGATGGGAAGTCTTGAAGgtaaattatc ... ttccatacagATCCCTCTTGATCGCTATTTACCCACATGGAGAGGAAATGTGATCCAGGCA
EST: GGCAGGCTTTTGTGTACATACCTCCTCAAGACAGATGGGAAGTCTTGAAG ATCCCTCTTGATCGCTATTTACCCACATGGAGAGGAAATGTGATCCAGGCAEST: gi|148953564|gb|EC898916.2|EC898916
genomic: GGCAGGCTTTTGTGTACATACCTCCTCAAGACAGATGGGAAGTCTTGAAGgtaaattatc ... ttccatacagATCCCTCTTGATCGCTATTTACCCACATGGAGAGGAAATGTGATCCAGGCA
EST: GGCAGGCTTTTGTGTACATACCTCCTCAAGACAGATGGGAAGTCTTGAAG ATCCCTCTTGATCGCTATTTACCCACATGGAGAGGAAATGTGATCCAGGCAEST: gi|148957873|gb|EC904027.2|EC904027
genomic: GGCAGGCTTTTGTGTACATACCTCCTCAAGACAGATGGGAAGTCTTGAAGgtaaattatc ... ttccatacagATCCCTCTTGATCGCTATTTACCCACATGGAGAGGAAATGTGATCCAGGCA
EST: GGCAGGCTTTTGTGTACATACCTCCTCAAGACAGATGGGAAGTCTTGAAG ATCCCTCTTGATCGCTATTTACCCACATGGAGAGGAAATGTGATCCAGGCAEST: gi|211417239|gb|FL450863.1|FL450863
genomic: GGCAGGCTTTTGTGTACATACCTCCTCAAGACAGATGGGAAGTCTTGAAGgtaaattatc ... ttccatacagATCCCTCTTGATCGCTATTTACCCACATGGAGAGGAAATGTGATCCAGGCA
EST: GGCAGGCTTTTGTGTACATACCTCCTCAAGACAGATGGGAAGTCTTAAAG ATCCCTCTTGATCGCTATTTACCCACATGGAGAGGAAATGTGATCCAGGCA
genomic: GGCAGGCTTTTGTGTACATACCTCCTCAAGACAGATGGGAAGTCTTGAAGgtaaattatc ... ttccatacagATCCCTCTTGATCGCTATTTACCCACATGGAGAGGAAATGTGATCCAGGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATACACGGAGAATTGGGTGAATTCACCCGGGCAACAAGAAGACAACTCGTGGCAGGCTTTTGTGTACATACCTCCTCAAGACAGATGGGAAGTCTTGAAGgtaaattatcgttttctatcgatcaacatccagagtatgtgactttttttagtgatgaagaaaccgttcccattccatacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG