1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TATGATCACCTCGGAACATCTTGTGACACTTCTTGCAATCGTTCCCAAGTACTCCCAAAAAGACTGGCTGTCAAGCTATGAGACACTTGATACATTTGTGgtaaggttaaatttcgattgcactcttcatttatcatgctttctgctcattacaacctcccaaattgaaatatttttcttataactttcctcttgaagag...
species | Zea mays |
transcript | GRMZM2G144372_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ACTCCCAAAAAGACTGGCTGTCAAGCTATGAGACACTTGATACATTTGTG GTACCTAGGTCATCTAAAAAGCTCTATGAAGACAACGAATATGCTCTCTACEST: gi|40336015|gb|CK370085.1|CK370085
genomic: ACTCCCAAAAAGACTGGCTGTCAAGCTATGAGACACTTGATACATTTGTGgtaaggttaa ... aattacatagGTACCTAGGTCATCTAAAAAGCTCTATGAAGACAACGAATATGCTCTCTAC
EST: ACTCCCAAAAAGACTGGCTGTCAAGCTATGAGACACTTGATACATTTGTG GTACCTAGGTCATCTAAAAAGCTCTATGAAGACAACGAATATGCTCTCTACEST: gi|67038589|gb|CO464901.1|CO464901
genomic: ACTCCCAAAAAGACTGGCTGTCAAGCTATGAGACACTTGATACATTTGTGgtaaggttaa ... aattacatagGTACCTAGGTCATCTAAAAAGCTCTATGAAGACAACGAATATGCTCTCTAC
EST: CTCCCANAAAGACTGGCTGTNCA-GCTATGAGACACTTGATACATTTGTG GTACCTAAGTCATCTAAAAAGCTCTATGAAGACAACGAATATGCTCTCTACEST: gi|89758156|gb|DY687449.1|DY687449
genomic: CTCCCAAAAAGACTGGCTGT-CAAGCTATGAGACACTTGATACATTTGTGgtaaggttaa ... aattacatagGTACCTAGGTCATCTAAAAAGCTCTATGAAGACAACGAATATGCTCTCTAC
EST: ACTCCCAAAAAGACTGGCTGTCAAGCTATGAGACACTTGATACATTTGTG GTACCTAGGTCATCTAAAAAGCTCTATGAAGACAACGAATATGCTCTCTACEST: gi|61117885|gb|DN558846.1|DN558846
genomic: ACTCCCAAAAAGACTGGCTGTCAAGCTATGAGACACTTGATACATTTGTGgtaaggttaa ... aattacatagGTACCTAGGTCATCTAAAAAGCTCTATGAAGACAACGAATATGCTCTCTAC
EST: ACTCCCAAAAAGACTGGCTGTCAAGCTATGAGACACTTGATACATTTGTG GTACCTAGGTCATCTAAAAAGCTCTATGAAGACAACGAATATGCTCTCTACEST: gi|148982506|gb|EE028351.2|EE028351
genomic: ACTCCCAAAAAGACTGGCTGTCAAGCTATGAGACACTTGATACATTTGTGgtaaggttaa ... aattacatagGTACCTAGGTCATCTAAAAAGCTCTATGAAGACAACGAATATGCTCTCTAC
EST: ACTCCCAAAAAGACTGGCTGTCAAGCTATGAGACACTTGATACATTTGTG GTACCTAGGTCATCTAAAAAGCTCTATGAAGACAACGAATATGCTCTCTACEST: gi|61117886|gb|DN558847.1|DN558847
genomic: ACTCCCAAAAAGACTGGCTGTCAAGCTATGAGACACTTGATACATTTGTGgtaaggttaa ... aattacatagGTACCTAGGTCATCTAAAAAGCTCTATGAAGACAACGAATATGCTCTCTAC
EST: ACTCCCAAAAAGACTGGCTGTCAAGCTATGAGACACTTGATACATTTGTG GTACCTAGGTCATCTAAAAAGCTCTATGAAGACAACGACTATGCTCTCTACEST: gi|31558493|gb|CD527705.1|CD527705
genomic: ACTCCCAAAAAGACTGGCTGTCAAGCTATGAGACACTTGATACATTTGTGgtaaggttaa ... aattacatagGTACCTAGGTCATCTAAAAAGCTCTATGAAGACAACGAATATGCTCTCTAC
EST: ACTCCCAAAAAGACTGGCTGTCAAGCTATGAGACACTTGATACATTTGTG GTACCTAGGTCATCTAAAAAGCTCTATGAAGACAACGAATATGCTCTCTACEST: gi|61117883|gb|DN558844.1|DN558844
genomic: ACTCCCAAAAAGACTGGCTGTCAAGCTATGAGACACTTGATACATTTGTGgtaaggttaa ... aattacatagGTACCTAGGTCATCTAAAAAGCTCTATGAAGACAACGAATATGCTCTCTAC
EST: ACTCCCAAAAAGACTGGCTGTCAAGCTATGAGACACTTGATACATTTGTG GTACCTAGGTCATCTAAAAAGCTCTATGAAGACAACGAATATGCTCTCTACEST: gi|76012958|gb|DT940128.1|DT940128
genomic: ACTCCCAAAAAGACTGGCTGTCAAGCTATGAGACACTTGATACATTTGTGgtaaggttaa ... aattacatagGTACCTAGGTCATCTAAAAAGCTCTATGAAGACAACGAATATGCTCTCTAC
EST: ACTCCCAAAAAGACTGGCTGTCAAGCTATGAGACACTTGATACATTTGTG GTACCTAGGTCATCTAAAAAGCTCTATGAAGACAACGAATATGCTCTCTACEST: gi|67023340|gb|CO452089.1|CO452089
genomic: ACTCCCAAAAAGACTGGCTGTCAAGCTATGAGACACTTGATACATTTGTGgtaaggttaa ... aattacatagGTACCTAGGTCATCTAAAAAGCTCTATGAAGACAACGAATATGCTCTCTAC
EST: ACTCCCAAAAAGACTGGCTGTCAAGCTATGAGACACTTGATACATTTGTG GTACCTAGGTCATCTAAAAAGCTCTATGAAGACAACGAATATGCTCTCTACEST: gi|32910803|gb|CF015615.1|CF015615
genomic: ACTCCCAAAAAGACTGGCTGTCAAGCTATGAGACACTTGATACATTTGTGgtaaggttaa ... aattacatagGTACCTAGGTCATCTAAAAAGCTCTATGAAGACAACGAATATGCTCTCTAC
EST: GACTGGCTGTCAAGCTGTGAGACACTTGATACATTTGTG GTACCTAGGTCATCTAAAAAGCTCTATGAAGACAACGAATATGCTCTCTACEST: gi|67010828|gb|CO439577.1|CO439577
genomic: GACTGGCTGTCAAGCTATGAGACACTTGATACATTTGTGgtaaggttaa ... aattacatagGTACCTAGGTCATCTAAAAAGCTCTATGAAGACAACGAATATGCTCTCTAC
EST: ACTGGCTGTCAAGCTATGAGACACTTGATACATTTGTG GTACCTAGGTCATCTAAAAAGCTCTATGAAGACAACGAATATGCTCTCTACEST: gi|31358589|gb|CD442946.1|CD442946
genomic: ACTGGCTGTCAAGCTATGAGACACTTGATACATTTGTGgtaaggttaa ... aattacatagGTACCTAGGTCATCTAAAAAGCTCTATGAAGACAACGAATATGCTCTCTAC
EST: ACTCCCAAAAAGACTGGCTGTCAAGCTATGAGACACTTGATACATTTGTG GTACCTAGGTCATCTAAAAAGCTCTATGAAGACAACGAATATGCTCTCTACEST: gi|67022208|gb|CO450957.1|CO450957
genomic: ACTCCCAAAAAGACTGGCTGTCAAGCTATGAGACACTTGATACATTTGTGgtaaggttaa ... aattacatagGTACCTAGGTCATCTAAAAAGCTCTATGAAGACAACGAATATGCTCTCTAC
EST: ACTCCCAAAAAGACTGGCTGTCAAGCTATGAGACACTTGATACATTTGTG GTACCTAGGTCATCTAAAAAGCTCTATGAAGACAACGAATATGCTCTCTACEST: gi|61117882|gb|DN558843.1|DN558843
genomic: ACTCCCAAAAAGACTGGCTGTCAAGCTATGAGACACTTGATACATTTGTGgtaaggttaa ... aattacatagGTACCTAGGTCATCTAAAAAGCTCTATGAAGACAACGAATATGCTCTCTAC
EST: ACTCCCAAAAAGACTGGCTGTCAAGCTATGAGACACTTGATACATTTGTG GTACCTAGGTCATCTAAAAAGCTCTATGAAGACAACGAATATGCTCTCTAC
genomic: ACTCCCAAAAAGACTGGCTGTCAAGCTATGAGACACTTGATACATTTGTGgtaaggttaa ... aattacatagGTACCTAGGTCATCTAAAAAGCTCTATGAAGACAACGAATATGCTCTCTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATGATCACCTCGGAACATCTTGTGACACTTCTTGCAATCGTTCCCAAGTACTCCCAAAAAGACTGGCTGTCAAGCTATGAGACACTTGATACATTTGTGgtaaggttaaatttcgattgcactcttcatttatcatgctttctgctcattacaacctcccaaattgaaatatttttcttataactttcctcttgaagag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctcccaa