Sequence
atgc intronic sequence ATGC exonic sequenceGTCTAACATGATGAGGCTGACTATGAACAGCAGATACGAGTTTCATAGCTGGTTCACATACTCAATTGTTCTTCTGTTTCTGTGTACCGCTGGATTTTGGgtatggctaacctaatgcgttgttcatgaggctactctgctgctcttatttgtctaattcaactccatatgccctatgtgacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G144254_T03 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os02g31874.1 (Oryza sativa), 5'ss of exon 9
GTCTAACATGATGAGGCTGACTATGAACAGCAGATACGAGTTTCATAGCTGGTTCACATACTCAATTGTTCTTCTGTTTCTGTGTACCGCTGGATTTTGGgta-----------tg-----gctaacctaatgcgttgttcatgaggctactctgc-tgctcttatt-------tgtctaattcaactccatatgccctatgtgacag
||| |||||| ||||||| || |||| |||||||||| |||| ||||||||||||||||||||||| |||| |||| || | ||| ||||| ||||||||| || ||||||||| ||||||||| | | || || | | ||| || | | | | || | | | | || ||| ||||
GTCAAACATGCTGAGGCTAACAATGAGCAGCAGATACCAGTTCCATAGCTGGTTCACATACTCAATGCTTCTGTTGTTCCTCTTTACAGCTGGCTTTTGGgtaattaagctaattgcaggcactaacctaaagcgttgttctttggacttctgttcatgccattgcgataataattttttttctaatttaaccttctctgtgtcacag
upper sequence: GRMZM2G144254_T03 (Zea mays), 5'ss of exon 6
lower sequence: Vv14s0068g00780.t01 (Vitis vinifera), 5'ss of exon 9
GTCTAACATGATGAGGCTGACTATGAACAGCAGATACGAGTTTCATAGCTGGTTCACATACTCAATTGTTCTTCTGTTTCTGTGTACCGCTGGATTTTGGgtatggct-------aacctaatgcgttgttcatg-aggctactctgctgctcttatttgtctaattcaac-tccatatgccctatgtgacag--------
|| ||| || |||| || | ||| || | || |||| |||||||||||||||||||| || ||||| ||||| |||| ||||||||||||||| | | ||| || | || | || | | || | || || |||| || | || | | | || ||| ||
CTCCAACCTGCTGAGATTGGCAATGTCTAGTGGCTATCAGTTGCATAGCTGGTTCACATACTCCATGCTTCTTTGCTTTCTTAGTACAGCTGGATTTTGGgtaaagatctcttgtaacttataaccttctctttgcatgttaaaat-taacttttggttgttaaaattaatatgctgagaagctccttgataggaattgaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|78022546|gb|DV490933.1|DV490933EST: GGTTCACATACTCAATTGTTCTTCTGTTTCTGTGTACCGCTGGATTTTGG ATGGGAAGATTGAATGAAGGGTTGTCATTATTTGATGCAATACTGATTGTT
genomic: GGTTCACATACTCAATTGTTCTTCTGTTTCTGTGTACCGCTGGATTTTGGgtatggctaa ... tatgtgacagATGGGAAGATTGAATGAAGGGTTGTCATTATTTGATGCAATACTGATTGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCTAACATGATGAGGCTGACTATGAACAGCAGATACGAGTTTCATAGCTGGTTCACATACTCAATTGTTCTTCTGTTTCTGTGTACCGCTGGATTTTGGgtatggctaacctaatgcgttgttcatgaggctactctgctgctcttatttgtctaattcaactccatatgccctatgtgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA