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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGCAACCTTGCGGCTCCAGTAGAAGAATGGACTGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttcttgcttcactttgttaccaactgatggctactctactatgctctagcagcattcttctttacactttattcaagtagcaaccaatgtgtga...

Basic information

species Zea mays
transcript GRMZM2G143862_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G143862_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os06g13810.1 (Oryza sativa), 5'ss of exon 13
GTTGGCAACCTTGCGGCTCCAGTAGAAGAATGGACTGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttcttgcttcactttgttaccaactgatggctactctactatgctctagcagcattcttctttacactttattcaagtagcaacca-atgtgtga
||||||||||| || ||||| || ||||||||||| ||||||||||| |||||||||||  |||||||||||||||||||||||||||  |||||    |  | |||||  ||  ||  |  ||     ||||| |  |  |  |||  | || ||  ||||||||| || | || |  ||  | |
GTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGgtaggtttctacagttccgttgtttgcacttggagattagctagctatgtttcattaa-atttcttttgaccgtttattcaaatacctactatgtgattaa

upper sequence: GRMZM2G143862_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA17G01360.1 (Glycine max), 5'ss of exon 11
GTTGGCAACCTTGCGGCTCCAGTAGAAGAATGGACTGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttcttgcttca--ctttgttaccaactgatggctactctactatgctctagcagcattcttctttacactttattcaagtagcaaccaatgtgtga---------------------------------------------------
||||| ||  |    ||||| |||||||||||||||||||||||||| ||| | || ||| ||||||| || |||||||| || ||||  |    |  |  |   |||| |     |  ||  ||| | |   |   | ||    ||||       |   | | |  | || |  ||   | | |||                                                   
GTTGGTAATTTGTGTGCTCCTGTAGAAGAATGGACTGTTGGTGGAACTGCACTCACTTCATTGATGGACGTGGAGAGGAGACATGgtatgtgatctattggagcttttgctttgccccaatacctattttctgaatgtttatt--cattacatgacattttgtctctatgttgttacatttatttgaatgtgctttctctgatgttctgctattaatgaattgtgattttctttttag

upper sequence: GRMZM2G143862_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA07G39380.2 (Glycine max), 5'ss of exon 13
GTTGGCAACCTTGCGGCTCCAGTAGAAGAATGGACTGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgta-attttcttgcttcactttgttaccaactgatggctactctactatgctctag--cagcattctt--ctttacactttatt--caagtagcaaccaatgtgtga-----------------------------------------------------
||||| ||  |    ||||| |||||||||||||||||||||||||| ||| | || ||| ||||||| || |||||||| || |||| || || |    |  |   | |      |     | |     ||||  ||||       |||| |  | | ||| ||| |   || || |  ||   | | |||                                                     
GTTGGTAATTTATGTGCTCCTGTAGAAGAATGGACTGTTGGTGGAACTGCACTCACTTCATTGATGGACGTGGAGAGGAGACATGgtatatattgtgatctagcagagcttttgctttgccccaatatacctattttctaaatttttattcattacatgacattttgtctccatgttgttacatttatttgaatgtgctttctctgatgttctgctgttaatgaattgtgtgattttctttttag

upper sequence: GRMZM2G143862_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA15G11890.1 (Glycine max), 5'ss of exon 13
GTTGGCAACCTTGCGGCTCCAGTAGAAGAATGGACTGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttcttgcttcactttgttaccaactgatggctactctactatgctctagcagcattcttctttacactttattcaagta-gcaaccaatgtgtga----
|||| |||  |    ||||| |||||||||||||||||||||||||| ||| | || |||||||||||||| ||||||||||| ||||      ||  |   |||||  |||   || |   ||| | | |      |  |   |||  | || |  |  || || |    |   |  |||| |      
GTTGCCAATTTATGTGCTCCGGTAGAAGAATGGACTGTTGGTGGAACTGCACTCACCTCACTGATGGATGTGGAGAGGAGGCATGgtacacactttcat---ctttgagaccttatgct--ttaccccattgactattttctttattagtgttcatgcaatactctatagtgttgctgatgtattttgat

upper sequence: GRMZM2G143862_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA09G01050.1 (Glycine max), 5'ss of exon 13
GTTGGCAACCTTGCGGCTCCAGTAGAAGAATGGACTGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttcttgcttcactttgttaccaactgatggctactctactatgctctagcagcattcttctttacactttattcaagta-gcaaccaatgtgtga----
||||| ||  |    ||||||||| |||||||||||||||||||||| ||| | || ||| |||||||||| ||||||||||| ||||      ||| |   |||||  |||   || |   ||| | | |      |  | | |||  | || |  |  || || | |  |   |    || |      
GTTGGGAATTTATGTGCTCCAGTAAAAGAATGGACTGTTGGTGGAACTGCACTCACCTCAATGATGGATGTGGAGAGGAGGCATGgtacacactttgat---ctttgggaccgtgtgct--ttaccccagtgactattttctgaattagtgttcatgcgatactctattgtgttgctgtagtattttgat

upper sequence: GRMZM2G143862_T01 (Zea mays), 5'ss of exon 6
lower sequence: Vv10s0116g00360.t01 (Vitis vinifera), 5'ss of exon 13
GTTGGCAACCTTGCGGCTCCAGTAGAAGAATGGACTGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgta----attttcttgcttcactttgttacca-actgatggctactctactatgctctagcagcattcttctttacactttattcaagtagcaaccaatgtgtga
||||| || ||  | |||||||| ||||||||||||||||||||||| || ||||| ||| | |||||||| |||||||| || ||||    |   |||   ||  |  | | ||    | ||||      ||| ||||    |      |||| ||||  |   |||     | |||    ||      
GTTGGGAATCTGTCTGCTCCAGTTGAAGAATGGACTGTTGGTGGAACTGCCTTGACTTCATTAATGGATGTGGAGAGGAGACATGgtatgatagcctctctttttcccatctcactttgcagatgtgattcctattatggaaaacttcttttctcctttggaggctata-gtctggcactttatac----

upper sequence: GRMZM2G143862_T01 (Zea mays), 5'ss of exon 6
lower sequence: Vv12s0059g01220.t01 (Vitis vinifera), 5'ss of exon 13
GTTGGCAACCTTGCGGCTCCAGTAGAAGAATGGACTGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttcttgcttcactttgttaccaactgatggctactctactatgctctagcagcattcttctttacactttattcaagtagcaaccaatgtgtga
|| || ||  | |  |||||||| ||||||||||| || || ||||| |||||||| ||  |||||||||| |||||||| || |||  |  |   |||||||||       | || || |   |  || ||| ||| |     ||     |||  | ||| |  ||     | ||| |  |   
GTGGGAAATTTGGGTGCTCCAGTTGAAGAATGGACAGTGGGAGGAACGGCATTGACTTCTTTGATGGATGTGGAGAGGAGACATGgtt-tgctaccgcttcactt-------atctcattgt--ccttattatcctccaatcatatcaggttttttattttttctaaacctta-ccatttggcag

upper sequence: GRMZM2G143862_T01 (Zea mays), 5'ss of exon 6
lower sequence: EFJ12684 (Selaginella moellendorffii), 5'ss of exon 13
GTTGGCAACCTTGCGGCTCCAGTAGAAGAATGGACTGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttcttgcttcactttgttaccaactgatggctactctactatgctctagcagcattcttctttacactttattcaagtagcaaccaatgtgtga
|| || ||  |  |  |  |   | |||| ||||| || || || || |||||||||||| ||||||||||||||||  ||   |||||   |  | |||||         |  |||  | ||    |  |   |||  ||||                                          
GTGGGGAATTTGTCAACCTCTTCAAAAGACTGGACCGTGGGAGGGACGGCATTGACATCATTGATGGATGTTGAGAGACGGAGAGgtaaaactgatacttcaa------gtccgctg-cgtctcacatgtttccctcgtgcag------------------------------------------

upper sequence: GRMZM2G143862_T01 (Zea mays), 5'ss of exon 6
lower sequence: EFJ13842 (Selaginella moellendorffii), 5'ss of exon 13
GTTGGCAACCTTGCGGCTCCAGTAGAAGAATGGACTGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttcttgcttcactttgttaccaactgatggctactctactatgctctagcagcattcttctttacactttattcaagtagcaaccaatgtgtga
|| || ||  |  | ||  |   | |||| |||||||| || || || |||||||||||| ||||||||||||||||  ||   |||||   |  | |||||  |      |  || |         |  |   |||  ||||                                          
GTGGGAAATTTGTCAGCCTCTTCAAAAGACTGGACTGTGGGAGGGACGGCATTGACATCATTGATGGATGTTGAGAGACGGAGAGgtaaaactgatacttcaagtccgctgcgtctcaca-----catgtttccctcgtgcag------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22521075|gb|BU079886.1|BU079886
EST:     TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACG                         GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
genomic: TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttct ... ctgcattcagGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
EST: gi|24934232|gb|CA452450.1|CA452450
EST:     TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACG                         GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
genomic: TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttct ... ctgcattcagGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
EST: gi|148933739|gb|EC877663.2|EC877663
EST:     TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACG                         GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
genomic: TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttct ... ctgcattcagGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
EST: gi|8516679|gb|BE123404.1|BE123404
EST:     TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACG                         GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
genomic: TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttct ... ctgcattcagGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
EST: gi|32945668|gb|CF050487.1|CF050487
EST:     GTTGGTGGAACCAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACG                         GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
genomic: GTTGGTGGAA-CAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttct ... ctgcattcagGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
EST: gi|15079595|gb|BI388765.1|BI388765
EST:     TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACG                         GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
genomic: TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttct ... ctgcattcagGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
EST: gi|32837934|gb|CD977612.1|CD977612
EST:     TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACG                         GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
genomic: TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttct ... ctgcattcagGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
EST: gi|213170617|gb|FM193174.1|FM193174
EST:     TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACG                         GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
genomic: TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttct ... ctgcattcagGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
EST: gi|78026256|gb|DV494643.1|DV494643
EST:     TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACG                         GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
genomic: TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttct ... ctgcattcagGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
EST: gi|67021131|gb|CO449880.1|CO449880
EST:     TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACG                         GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
genomic: TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttct ... ctgcattcagGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
EST: gi|32859024|gb|CD998705.1|CD998705
EST:     TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACG                         GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
genomic: TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttct ... ctgcattcagGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
EST: gi|148934427|gb|EC878461.2|EC878461
EST:     TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACG                         GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
genomic: TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttct ... ctgcattcagGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
EST: gi|149105031|gb|EE290510.2|EE290510
EST:     TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACG                         GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
genomic: TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttct ... ctgcattcagGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
EST: gi|16918407|gb|BM073730.1|BM073730
EST:     TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACG                         GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
genomic: TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttct ... ctgcattcagGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
EST: gi|211286471|gb|FL080392.1|FL080392
EST:     TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACG                         GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
genomic: TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttct ... ctgcattcagGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
EST: gi|31359777|gb|CD444134.1|CD444134
EST:     TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACG                         GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
genomic: TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttct ... ctgcattcagGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
EST: gi|8516411|gb|BE123137.1|BE123137
EST:     AGCATTGCCATCACTGATGGATGTTGAGAGGAGGCCCG                         GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
genomic: AGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttct ... ctgcattcagGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
EST: gi|67023546|gb|CO452295.1|CO452295
EST:     TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACG                         GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
genomic: TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttct ... ctgcattcagGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
EST: gi|37398696|gb|CF636665.1|CF636665
EST:     TGTTGGTGGAACACCATTGACATCACTGATGGATGTTGAGAGGAGGCACG                         CCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
genomic: TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttct ... ctgcattcagGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
EST: gi|4886023|gb|AI677143.1|AI677143
EST:     TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACG                         GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
genomic: TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttct ... ctgcattcagGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
EST: gi|4630558|gb|AI621432.1|AI621432
EST:     GCATTGACATCACTGATGGATGTTGAGAGGAGGCACG                         GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
genomic: GCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttct ... ctgcattcagGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
EST: gi|22521074|gb|BU079885.1|BU079885
EST:     TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCCCG                         GCAAGTTCAAGCCCGTGATCAAGAAGGCTATGGTGGAACTCGATG
genomic: TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttct ... ctgcattcagGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
EST: gi|211377905|gb|FL437238.1|FL437238
EST:     TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACG                         GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
genomic: TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttct ... ctgcattcagGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
EST: gi|8516291|gb|BE123018.1|BE123018
EST:     TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACG                         GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
genomic: TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttct ... ctgcattcagGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
EST: gi|24767218|gb|CA402362.1|CA402362
EST:     TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACG                         GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
genomic: TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttct ... ctgcattcagGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
EST: gi|22715446|gb|BU197768.1|BU197768
EST:     TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACG                         GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
genomic: TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttct ... ctgcattcagGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
EST: gi|15100393|gb|BI396184.1|BI396184
EST:     TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACG                         GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
genomic: TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttct ... ctgcattcagGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
EST: gi|67015451|gb|CO444200.1|CO444200
EST:     TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACG                         GCAAGTTCAAGCCAGTGATCAAGAAAGCTATGGTGGAACTCGATG
genomic: TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttct ... ctgcattcagGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
EST: gi|33102141|gb|CF062101.1|CF062101
EST:     TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACG                         GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
genomic: TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttct ... ctgcattcagGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
EST: gi|78026598|gb|DV494985.1|DV494985
EST:     TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACG                         GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
genomic: TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttct ... ctgcattcagGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
EST: gi|67024935|gb|CO453684.1|CO453684
EST:     TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACG                         GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
genomic: TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttct ... ctgcattcagGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
EST: gi|211286472|gb|FL080393.1|FL080393
EST:     TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACG                         GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
genomic: TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttct ... ctgcattcagGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
EST: gi|4886138|gb|AI677258.1|AI677258
EST:     TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACG                         GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
genomic: TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttct ... ctgcattcagGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
EST: gi|60343399|gb|DN210372.1|DN210372
EST:     TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACG                         GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
genomic: TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttct ... ctgcattcagGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
EST: gi|60394144|gb|DN227014.1|DN227014
EST:     TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACG                         GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
genomic: TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttct ... ctgcattcagGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
EST: gi|32849141|gb|CD988822.1|CD988822
EST:     TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACG                         GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
genomic: TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttct ... ctgcattcagGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
EST: gi|67012343|gb|CO441092.1|CO441092
EST:     TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACG                         GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
genomic: TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttct ... ctgcattcagGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
EST: gi|32847266|gb|CD986947.1|CD986947
EST:     TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACG                         GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
genomic: TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttct ... ctgcattcagGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
EST: gi|67021107|gb|CO449856.1|CO449856
EST:     TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACG                         GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
genomic: TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttct ... ctgcattcagGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
EST: gi|6654183|gb|AW267588.1|AW267588
EST:     TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACG                         GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
genomic: TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttct ... ctgcattcagGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
EST: gi|5108301|gb|AI740014.1|AI740014
EST:     TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACG                         GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
genomic: TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttct ... ctgcattcagGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
EST: gi|149081933|gb|EE171094.2|EE171094
EST:     TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACG                         GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
genomic: TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttct ... ctgcattcagGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
EST: gi|87155550|gb|DY400339.1|DY400339
EST:     TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACG                         GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
genomic: TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttct ... ctgcattcagGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
EST: gi|211286475|gb|FL080396.1|FL080396
EST:     TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACG                         GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
genomic: TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttct ... ctgcattcagGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
EST: gi|6827945|gb|AW331588.1|AW331588
EST:     ATGTTGAGAGGAGGCACG                         GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
genomic: ATGTTGAGAGGAGGCACGgtaattttct ... ctgcattcagGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
EST: gi|71324861|gb|DR799137.1|DR799137
EST:     TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACG                         GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
genomic: TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttct ... ctgcattcagGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
EST: gi|5018318|gb|AI714511.1|AI714511
EST:     TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACG                         GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATGCTG
genomic: TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttct ... ctgcattcagGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATGCTG
EST: gi|32839102|gb|CD978783.1|CD978783
EST:     TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACG                         GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
genomic: TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttct ... ctgcattcagGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
EST: gi|3157350|gb|AA979972.1|AA979972
EST:     TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACG                         GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
genomic: TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttct ... ctgcattcagGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
EST: gi|26558921|gb|CA831156.1|CA831156
EST:     TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACG                         GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
genomic: TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttct ... ctgcattcagGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
EST: gi|211286477|gb|FL080398.1|FL080398
EST:     TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACG                         GCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG
genomic: TGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttct ... ctgcattcagGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 183

GTTGGCAACCTTGCGGCTCCAGTAGAAGAATGGACTGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttct ... ctgcattcagGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 212

GTTGGCAACCTTGCGGCTCCAGTAGAAGAATGGACTGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttct ... ctgcattcagGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 278

GTTGGCAACCTTGCGGCTCCAGTAGAAGAATGGACTGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttct ... ctgcattcagGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 310

GTTGGCAACCTTGCGGCTCCAGTAGAAGAATGGACTGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttct ... ctgcattcagGCAAGTTCAAGCCAGTGATCAAGAAGGCTATGGTGGAACTCGATG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTGGCAACCTTGCGGCTCCAGTAGAAGAATGGACTGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACGgtaattttcttgcttcactttgttaccaactgatggctactctactatgctctagcagcattcttctttacactttattcaagtagcaaccaatgtgtga

- - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG