1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CAGGCCTTCTGGGTATCATGGTTGGACATCTATACTACTACTTTGCAGTGTTGCACCCTCTCGCCACCGGAAAGAACTACCTCAAGACTCCGAAATGGGTgtatccttttacatggtcatggccaaagcattatctctcagtttgcatatacaactgagatcaatttctgcgctatggctactttattttttaatatatctgctccttgtctccttaacctgctgcacttgcacag
species | Zea mays |
transcript | GRMZM2G143817_T01 |
intron # | 6 |
splice site | 5' |
intron type | U12 (go to U12 genes for details) |
EST: TTGCACCCTCTCGCCACCGGAAAGAACTACCTCAAGACTCCGAAATGGGT ACATAAGATTGTTGCTCGATTCAGAATAGGCATGCAAGCCAACGCTCCTGTEST: gi|18176218|gb|BM351250.1|BM351250
genomic: TTGCACCCTCTCGCCACCGGAAAGAACTACCTCAAGACTCCGAAATGGGTgtatcctttt ... acttgcacagACATAAGATTGTTGCTCGATTCAGAATAGGTATGCAAGCCAACGCTCCTGT
EST: TTGCACCCTCTCGCCACCGGAAAGAACTACCTCAAGACTCCGAAATGGGT ACATAAGATTGTTGCTCGATTCAGAATAGGTATGCAAGCCAACGCTCCTGTEST: gi|67017752|gb|CO446501.1|CO446501
genomic: TTGCACCCTCTCGCCACCGGAAAGAACTACCTCAAGACTCCGAAATGGGTgtatcctttt ... acttgcacagACATAAGATTGTTGCTCGATTCAGAATAGGTATGCAAGCCAACGCTCCTGT
EST: TTGCACCCTCTCGCCACCGGAAAGAACTACCTCAAGACTCCGAAATGGGT ACATAAGATTGTTGCTCGATTCAGAATAGGCATGCAAGCCAACGCTCCTGT
genomic: TTGCACCCTCTCGCCACCGGAAAGAACTACCTCAAGACTCCGAAATGGGTgtatcctttt ... acttgcacagACATAAGATTGTTGCTCGATTCAGAATAGGTATGCAAGCCAACGCTCCTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGGCCTTCTGGGTATCATGGTTGGACATCTATACTACTACTTTGCAGTGTTGCACCCTCTCGCCACCGGAAAGAACTACCTCAAGACTCCGAAATGGGTgtatccttttacatggtcatggccaaagcattatctctcagtttgcatatacaactgagatcaatttctgcgctatggctactttattttttaatatatctgctccttgtctccttaacctgctgcacttgcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC