Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTTTCGTAAGGAACCATTTTTCTACGGGCATGACAACCATGATCAACTTGTTAAGATAGCCAAGgttatcaattcagcctgcttgttgtttgcaatgaactgcttagctagctatgttgcttacttttgcaatgtcatgtagcttgcaagtgctgattattgttacatcctttatcag

Basic information

species Zea mays
transcript GRMZM2G143602_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G143602_T03 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os07g02350.1 (Oryza sativa), 5'ss of exon 6
ATTTTTCGTAAGGAACCATTTTTCTACGGGCATGACAACCATGATCAACTTGTTAAGATAGCCAAGgttatcaattcagcctgcttgttgtttgcaatgaactgcttagctagctatgttgcttacttttgcaatgtcatgtagcttgcaagtgctgattattgttacatcctttatcag
|| || || ||||| ||||||||||| || ||||||||||||||||||||||||||||| || ||||| ||    ||||| || || |  |     ||||  || | |   |   |||      | ||      |  | | |   |   |  ||   | ||| |||  |||         
ATCTTCCGCAAGGAGCCATTTTTCTATGGTCATGACAACCATGATCAACTTGTTAAGATCGCAAAGgtgattt-ctcagcttgtttatgttaaaagatga--tgttcatacaagaatgaaatgcatttcatgtttagcttatcattcatac-tgtacactatggtt-tatc---------

upper sequence: GRMZM2G143602_T03 (Zea mays), 5'ss of exon 6
lower sequence: PP1S165_119V6.1 (Physcomitrella patens), 5'ss of exon 7
ATTTTTCGTAAGGAACCATTTTTCTACGGGCATGACAACCATGATCAACTTGTTAAGATAGCCAAGgt----tatcaattcagcctgcttgttgtttgcaatgaactgcttagctagctatgttgcttacttttgcaatgtcatgtagcttgca-----agtgctgattattgttacatcctttatcag-------------------
|| ||||| ||||| ||||| || || |||||||||||  ||||||||||||| ||||| || |||||    |  || ||||  |      |||  | |||  |  |   || |    | | ||  ||   | |  || ||||| |  ||  |      |  ||  | |  ||||     | |||||                     
ATATTTCGGAAGGAGCCATTCTTTTATGGGCATGACAATTATGATCAACTTGTGAAGATTGCTAAGgtgcagtggcagttcatacatagatttgccttcaagcagttatatatcactttttatttattttgtataaaaagtcatattactgtctttcgcaacgccaagttgtgttttgagccttatctttgtgggtgtctgataccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|61117728|gb|DN558689.1|DN558689
EST:     CATTTTTCTACGGGCATGACAACCATGATCAACTTGTTAAGATAGCCAAG                         GTACTTGGGACAGATGGGCTGAATGTTTATTTGAACAAGTACAGAATTGAG
genomic: CATTTTTCTACGGGCATGACAACCATGATCAACTTGTTAAGATAGCCAAGgttatcaatt ... cctttatcagGTACTTGGGACAGATGGGCTGAATGTTTATTTGAACAAGTACAGAATTGAG
EST: gi|60396112|gb|DN228981.1|DN228981
EST:     CATTTTTCTACGGGCATGACAACCATGATCAACTTGTTAAGATAGCCAAG                         GTACTTGGGACAGATGGGCTGAATGTTTATTTGAACAAGTACAGAATTGAG
genomic: CATTTTTCTACGGGCATGACAACCATGATCAACTTGTTAAGATAGCCAAGgttatcaatt ... cctttatcagGTACTTGGGACAGATGGGCTGAATGTTTATTTGAACAAGTACAGAATTGAG
EST: gi|71770652|gb|DR968589.1|DR968589
EST:     CATTTTTCTACGGGCATGACAACCATGATCAACTTGTTAAGATAGCCAAG                         GTACTTGGGACAGATGGGCTGAATGTTTATTTGAACAAGTACAGAATTGAG
genomic: CATTTTTCTACGGGCATGACAACCATGATCAACTTGTTAAGATAGCCAAGgttatcaatt ... cctttatcagGTACTTGGGACAGATGGGCTGAATGTTTATTTGAACAAGTACAGAATTGAG
EST: gi|19822196|gb|BQ048220.1|BQ048220
EST:     CATTTTTCTACGGGCATGACAACCATGATCAACTTGTTAAGATAGCCAAG                         GTACTTGGGACAGATGGGCTGAATGCTTATTTGAACAAGTACAGAATTGAG
genomic: CATTTTTCTACGGGCATGACAACCATGATCAACTTGTTAAGATAGCCAAGgttatcaatt ... cctttatcagGTACTTGGGACAGATGGGCTGAATGTTTATTTGAACAAGTACAGAATTGAG
EST: gi|16377160|gb|BI991802.1|BI991802
EST:     CATTTTTCTACGGGCATGACANCCATGATCAACTTGTTAAGATAGCCAAG                         GTACTTGGGACAGATGGGCTGAATGTTTATTTGAACAAGTACAGAATTGAG
genomic: CATTTTTCTACGGGCATGACAACCATGATCAACTTGTTAAGATAGCCAAGgttatcaatt ... cctttatcagGTACTTGGGACAGATGGGCTGAATGTTTATTTGAACAAGTACAGAATTGAG
EST: gi|60395786|gb|DN228656.1|DN228656
EST:     CATTTTTCTACGGGCATGACAACCATGATCAACTTGTTAAGATAGCCAAG                         GTACTTGGGACAGATGGGCTGAATGTTTATTTGAACAAGTACAGAATTGAG
genomic: CATTTTTCTACGGGCATGACAACCATGATCAACTTGTTAAGATAGCCAAGgttatcaatt ... cctttatcagGTACTTGGGACAGATGGGCTGAATGTTTATTTGAACAAGTACAGAATTGAG
EST: gi|60343609|gb|DN210582.1|DN210582
EST:     CATTTTTCTACGGGCATGACAACCATGATCAACTTGTTAAGATAGCCAAG                         GTACTTGGGACAGATGGGCTGAATGTTTATTTGAACAAGTACAGAATTGAG
genomic: CATTTTTCTACGGGCATGACAACCATGATCAACTTGTTAAGATAGCCAAGgttatcaatt ... cctttatcagGTACTTGGGACAGATGGGCTGAATGTTTATTTGAACAAGTACAGAATTGAG
EST: gi|21389960|gb|BQ528009.1|BQ528009
EST:     CATTTTTCTACGGGCATGACAACCATGATCAACTTGTTAAGATAGCCAAG                         GTACTTGGGACAGATGGGCTGAATGCTTATTTGAACAAGTACAGAATTGAG
genomic: CATTTTTCTACGGGCATGACAACCATGATCAACTTGTTAAGATAGCCAAGgttatcaatt ... cctttatcagGTACTTGGGACAGATGGGCTGAATGTTTATTTGAACAAGTACAGAATTGAG
EST: gi|29576767|gb|CB616879.1|CB616879
EST:     CATTTTTCTACGGGCATGACAACCATGATCAACTTGTTAAGATAGCCAAG                         GTACTTGGGACAGATGGGCTGAATGTTTATTTGAACAAGTACAGAATTGAG
genomic: CATTTTTCTACGGGCATGACAACCATGATCAACTTGTTAAGATAGCCAAGgttatcaatt ... cctttatcagGTACTTGGGACAGATGGGCTGAATGTTTATTTGAACAAGTACAGAATTGAG
EST: gi|20507674|gb|BQ279724.1|BQ279724
EST:     CATTTTTCTACGGGCATGGCAACCATGATCAGCTTGTTAAGATAGCCAAG                         GTGCTTGGGACAGATGGGCTGAATGCTTATTTGAACAAGTACAGAATTGAG
genomic: CATTTTTCTACGGGCATGACAACCATGATCAACTTGTTAAGATAGCCAAGgttatcaatt ... cctttatcagGTACTTGGGACAGATGGGCTGAATGTTTATTTGAACAAGTACAGAATTGAG
EST: gi|6993987|gb|AW453201.1|AW453201
EST:     ATTTTTCTACGGGCATGACAACCATGATCAACTTGCTAAGATAGCCAAG                         GTACTTGGGACAGATGGGCTGAATGCTTATTTGAACAAGTACAGAATTGAG
genomic: ATTTTTCTACGGGCATGACAACCATGATCAACTTGTTAAGATAGCCAAGgttatcaatt ... cctttatcagGTACTTGGGACAGATGGGCTGAATGTTTATTTGAACAAGTACAGAATTGAG
EST: gi|60340369|gb|DN207342.1|DN207342
EST:     CATTTTTCTACGGGCATGACAACCATGATCAACTTGTTAAGATAGCCAAG                         GTACTTGGGACAGATGGGCTGAATGTTTATTTGAACAAGTACAGAATTGAG
genomic: CATTTTTCTACGGGCATGACAACCATGATCAACTTGTTAAGATAGCCAAGgttatcaatt ... cctttatcagGTACTTGGGACAGATGGGCTGAATGTTTATTTGAACAAGTACAGAATTGAG
EST: gi|211466861|gb|FL187159.1|FL187159
EST:     CATTTTTCTACGGGCATGACAACCATGATCAACTTGTTAAGATAGCCAAG                         GTACTTGGGACAGATGGGCTGAATGTTTATTTGAACAAGTACAGAATTGAG
genomic: CATTTTTCTACGGGCATGACAACCATGATCAACTTGTTAAGATAGCCAAGgttatcaatt ... cctttatcagGTACTTGGGACAGATGGGCTGAATGTTTATTTGAACAAGTACAGAATTGAG
EST: gi|78073838|gb|DV502272.1|DV502272
EST:     CATTTTTCTACGGGCATGACAACCATGATCAACTTGTTAAGATAGCCAAG                         GTACTTGGGACAGATGGGCTGAATGTTTATTTGAACAAGTACAGAATTGAG
genomic: CATTTTTCTACGGGCATGACAACCATGATCAACTTGTTAAGATAGCCAAGgttatcaatt ... cctttatcagGTACTTGGGACAGATGGGCTGAATGTTTATTTGAACAAGTACAGAATTGAG
EST: gi|71770653|gb|DR968590.1|DR968590
EST:     CATTTTTCTACGGGCATGACAACTATGATCAACTTGTTAAGATAGCCAAG                         GTACTTGGGACAGATGGGCTGAATG
genomic: CATTTTTCTACGGGCATGACAACCATGATCAACTTGTTAAGATAGCCAAGgttatcaatt ... cctttatcagGTACTTGGGACAGATGGGCTGAATG
EST: gi|60395745|gb|DN228615.1|DN228615
EST:     CATTTTTCTACGGGCATGACAACCACGATCAACTTGTTAAGATAGCCAAG                         GTACTTGGGACAGATGGGCTGAATGCTTATTTGAACAAGTACAGAATTGAG
genomic: CATTTTTCTACGGGCATGACAACCATGATCAACTTGTTAAGATAGCCAAGgttatcaatt ... cctttatcagGTACTTGGGACAGATGGGCTGAATGTTTATTTGAACAAGTACAGAATTGAG