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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTACAACCCAAGAAACAAGCCTTGCTGCGAGTTGCCGAAGAGTATATGCTCATGCACATGACTATCATATAAATTCAATATCAAATAACAGgtccttcacatcactacaccagtcacttgtatcagtatatgcatttgaatgtaccttagctaatgtttgagtttttcagctattgaatttgagtatgaca...

Basic information

species Zea mays
transcript GRMZM2G142334_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G142334_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os01g41630.1 (Oryza sativa), 5'ss of exon 6
GTTACAACCCAAGAAACAAGCCTTGCTGCGAGTTGCCGAAGAGTATATGCTCATGCACATGACTATCATATAAATTCAATATCAAATAACAGgtccttcacatcactacaccagtcacttgtatcagtatatgcatttgaatgtacct-tagctaatgtttgagtttttcagctattgaatttgagtatgaca
||||||| |||||||||||| ||| |||| |||||||||||||| | | | |||||||||||||| |||||||| || || |||||||||||||| |  |||| | ||      | | ||   |   ||   |   ||   || || | | |||| ||  |  |     | || |||   |   | |  |   
GTTACAAGCCAAGAAACAAGTCTTTCTGCAAGTTGCCGAAGAGTCTTTACGCATGCACATGACTACCATATAAACTCTATTTCAAATAACAGgtcttctacattattaatttttttatttagttgtataatagatattatttgaacttgttgctattgaatatgacca-cggccattagctccaaatgagtgt

upper sequence: GRMZM2G142334_T02 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA07G01440.1 (Glycine max), 5'ss of exon 6
GTTACAACCCAAGAAACAAGCCTTGCTGCGAGTTGCCGAAGAGTATATGCTCATGCACATGACTATCATATAAATTCAATATCAAATAACAGgtccttcacatcactacaccagtcacttgtatcagtatatgcattt--gaatgtacctta--gctaatgtttgagtttttcagc-tattg--aatttgagtatgaca
|| || | ||| || || ||  | |  ||  | || || ||||||||||| ||||| ||||| |||||||| ||||| || |||||||||||||  ||   | |  |      |   | | | | ||  | | || |   |||| |  |||   | | || |||   | ||| | | || ||   ||||||   |    
GTAACCAGCCATGAGACCAGTTTGGTGGCTCGATGTCGTAGAGTATATGCCCATGCTCATGATTATCATATTAATTCTATTTCAAATAACAGgtgatttgaaaccttg---agggttcctattttaggctgttcagtgtggaatcttgctttttggttatctttatttgttttaacgtagtgttgatttgaaagt----

upper sequence: GRMZM2G142334_T02 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA13G42800.2 (Glycine max), 5'ss of exon 6
GTTACAACCCAAGAAACAAGCCTTGCTGCGAGTTGCCGAAGAGTATATGCTCATGCACATGACTATCATATAAATTCAATATCAAATAACAGgtccttcacatcactacaccagtcacttgtatcagtata-tgcatttgaatgtaccttagctaatgtttgagtttttcagctattgaatttgagtatgaca--
|| |  | ||| ||||| ||| | | |||  | ||||| ||||| ||||| ||||| ||||| ||||| || ||||| || |||||||||||||  || |  |  ||      ||   |||    ||| ||    ||||   |  |  | ||  ||   |   | | ||||| | |  |  |||  |||   |  
GTAAGTAGCCATGAAACCAGCTTAGTTGCCCGATGCCGTAGAGTGTATGCGCATGCTCATGATTATCACATCAATTCTATTTCAAATAACAGgtattttagttttcttattttgtactttgccatagtctagcaaattttggttgaattgag--aaccctctgggtattcag-tgtcaatcttgcatatattatt

upper sequence: GRMZM2G142334_T02 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA08G20830.4 (Glycine max), 5'ss of exon 6
GTTACAACCCAAGAAACAAGCCTTGCTGCGAGTTGCCGAAGAGTATATGCTCATGCACATGACTATCATATAAATTCAATATCAAATAACAGgtccttcacatcactacaccagtcacttgtatcagtatatgcatttgaatgtaccttagctaatgtttgagttt--ttcagctattg-aatttgagtatgaca--
|| || | ||| || || ||  |    ||  | ||||| ||||||||||| ||||| ||||| |||||||| ||||| || |||||||||||||  ||   |  ||  |    ||  | | ||  ||| | | || |       | |||   |  || ||   |||  |||   ||||| | | |   | ||| |  
GTAACCAGCCATGAGACCAGTTTGATGGCTCGATGCCGTAGAGTATATGCCCATGCTCATGATTATCATATTAATTCTATTTCAAATAACAGgtgatttgaa--acctcgagggtt-cctataatagtctgttcagt--gtcaaatcttgctttttggttatctttatttcttttattgtagtgttgatttgaaagt

upper sequence: GRMZM2G142334_T02 (Zea mays), 5'ss of exon 6
lower sequence: AT1G51690.3 (Arabidopsis thaliana), 5'ss of exon 8
GTTACAACCCAAGAAACAAGCCTTGCTGCGAGTTGCCGAAGAGTATATGCTCATGCACATGACTATCATATAAATTCAATATCAAATAACAGgtccttcacatcactacaccagtc--acttgtatcagtatatgcatttgaatgtaccttagctaatgtttgagtttttcagctat-tgaatttgagtatgaca-
|| || | ||| ||  | |||| ||  || || || |||||||||||||||||||| ||||| |||||||| |||||||| |||||||||||||   | |     | |    | |   |||||  ||  | |    | | | |  | | |||  |  |     |    ||||   || | | | | |||       
GTAACTAGCCATGAGTCGAGCCCTGTGGCTAGATGTCGAAGAGTATATGCTCATGCTCATGATTATCATATTAATTCAATCTCAAATAACAGgtaggttattcacccattggaattcaacttgcttccttct---tactagcaactgctttatttg-tccgcaaaaaattcaatgatgtcactataagtcgtctga

upper sequence: GRMZM2G142334_T02 (Zea mays), 5'ss of exon 6
lower sequence: AT1G17720.2 (Arabidopsis thaliana), 5'ss of exon 6
GTTACAACCCAAGAAACAAGCCTTGCTGCGAGTTGCCGAAGAGTATATGCTCATGCACATGACTATCATATAAATTCAATATCAAATAACAGgtccttcacatcactacaccagtcacttgtatcagtatatgcatttgaatgtaccttagctaatgtttgagtttttcagctattgaatttgagtatgaca--
||||| | ||| || || | |||||  || || ||||||||||| ||||| ||||| ||||| || ||||| |||||||| || |||| |||||  |     ||   |       | |  ||   |   | | |  ||||     | ||| |  | ||||  | | |    ||  | |||||    ||  ||  
GTTACCAGCCAGGAGACTAACCTTGTGGCTAGATGCCGAAGAGTGTATGCCCATGCTCATGATTACCATATTAATTCAATCTCCAATAGCAGgtaatcgttttcctaagttttccctcaggttatatgttttactcttgatatctctttaac--acgtttttgctgtctttctccttaatttttccatctcagg

upper sequence: GRMZM2G142334_T02 (Zea mays), 5'ss of exon 6
lower sequence: Vv04s0008g00840.t01 (Vitis vinifera), 5'ss of exon 6
GTTACAACCCAAGAAACAAGCCTTGCTGCGAGTTGCCGAAGAGTATATGCTCATGCACATGACTATCATATAAATTCAATATCAAATAACAGgtcc-ttcacat----cactacaccagtcacttgtatcagtatatgcatttgaatgtaccttagctaatgtttgagtttttcagctattgaatttgagtatgaca
|| |  |  || || ||||||   |  || || || || ||| | ||||||||||| |||||||||||||| ||||| || ||||||||||||| |  ||||||       |  ||   |  ||    |   | |||| ||||| || |||   |  |  |||||   | | |  || ||  | |   | |  ||  
GTGATGAGTCATGAGACAAGCTCAGTGGCCAGGTGTCGGAGAATTTATGCTCATGCCCATGACTATCATATCAATTCCATTTCAAATAACAGgtgcactcacatatcttgttgaacatattcctctactttttgtatg-atttgtat-tacagcatgtcctgtttttatatattggc-atgtattcctaattgga--

upper sequence: GRMZM2G142334_T02 (Zea mays), 5'ss of exon 6
lower sequence: Vv09s0002g02470.t01 (Vitis vinifera), 5'ss of exon 6
GTTACAACCCAAGAAACAAGCCTTGCTGCGAGTTGCCGAAGAGTATATGCTCATGCACATGACTATCATATAAATTCAATATCAAATAACAGgtccttcacatcactacaccagtcacttgtatcagtatatgcatttgaatgtaccttagctaatgtttgagtttttcagctattgaatttgagt-atgaca--
||  ||| ||  || || ||||| |  || || || || ||||| ||||||||||| || ||||||||||| ||||| || |||||||| ||||  ||| ||  ||  ||    | | || |  ||    ||| |  ||  | |   |       ||||    || ||||  |||||  |||   | |||||   
GTATCAAGCCCTGAGACCAGCCTGGTGGCTAGATGTCGTAGAGTTTATGCTCATGCTCACGACTATCATATCAATTCTATTTCAAATAATAGgtggttc-cacaacc-catactttaattctcgcatataatgtagctgt-tctgtttacatatctgttcaccttgttcatgtattgggtttatcttatgacctt

upper sequence: GRMZM2G142334_T02 (Zea mays), 5'ss of exon 6
lower sequence: Vv11s0016g02550.t01 (Vitis vinifera), 5'ss of exon 6
GTTACAACCCAA-GAAACAAGCCTTGCTGCGAGTTGCCGAAGAGTATATGCTCATGCACATGACTATCATATAAATTCAATATCAAATAACAGgtccttcacatcactacaccagtcacttgtatcagtatatgcatttgaatgtaccttagctaa--tgtttgagtttttcagc-tattgaatttgagtatgaca---
  ||||   ||| |||||||||||  | || || || |||||| ||||||||||||| |||||||||||||| ||||| || ||||| |||||||       ||   |  |   || |   || |    || |  || |  |   |  || | | |  | ||| | |||     | | ||| |||| || || | |   
-GTACACAGCAATGAAACAAGCCTATCAGCTAGATGTCGAAGAATATATGCTCATGCTCATGACTATCATATCAATTCCATTTCAAACAACAGgt-----gaattctttaattggttataggtttttaaatttttatcttgaatcatatttgttgacttatttcaatttcctttcatgttggattt-agcatcaaactt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6020391|gb|AW065319.1|AW065319
EST:     GTATATGCTCATGCACATGACTATCATATAAATTCAATATCAAATAACAG                         TGATGGTGAGACATTTATATCAGCTGATGATTTGCGGATAAATCTTTGGAA
genomic: GTATATGCTCATGCACATGACTATCATATAAATTCAATATCAAATAACAGgtccttcaca ... atttccacagTGATGGTGAGACATTTATATCAGCTGATGATTTGCGGATAAATCTTTGGAA