1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GGTGGGCTGATAATTAGTGACTCTCTGAATCATAACTCAATTGTCAATGGTGCGAGAGGATCTGGTGCAACTGTTAGGGTTTTCCAGCATAACTgtgagttattgtgcttccggcaatgcaaatcaatatttggtctctcttgttcatgacttaccatggcaaatgaaatcttacag
species | Zea mays |
transcript | GRMZM2G142030_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CAATGGTGCGAGAGGATCTGGTGCAACTGTTAGGGTTTTCCAGCATAACT CCCCTGCTCATTTGGAAGAGGTCTTGAGAGAGCAGATAGCTGGTGGTCAACEST: gi|32940747|gb|CF045566.1|CF045566
genomic: CAATGGTGCGAGAGGATCTGGTGCAACTGTTAGGGTTTTCCAGCATAACTgtgagttatt ... aatcttacagCCCCTGCTCATTTGGAAGAGGTCTTGAGAGAGCAGATAGCTGGTGGTCAAC
EST: CAATGGTGCGAGAGGATCTGGTGCAACTGTTAGGGTTTTCCAGCATAACT CCCCTGCTCATTTGGAAGAGGTCTTGAGAGAGCAGATAGCTGGTGGTCAACEST: gi|22818806|gb|BU498896.1|BU498896
genomic: CAATGGTGCGAGAGGATCTGGTGCAACTGTTAGGGTTTTCCAGCATAACTgtgagttatt ... aatcttacagCCCCTGCTCATTTGGAAGAGGTCTTGAGAGAGCAGATAGCTGGTGGTCAAC
EST: CAATGGTGCGAGAGGATCTGGTGCAACTGTTAGGGTTTTCCAGCATAACT CCCCTGCTCATTTGGAAGAGGTCTTGAGAGAGCAGATAGCTGGTGGTCAACEST: gi|211205538|gb|FL096683.1|FL096683
genomic: CAATGGTGCGAGAGGATCTGGTGCAACTGTTAGGGTTTTCCAGCATAACTgtgagttatt ... aatcttacagCCCCTGCTCATTTGGAAGAGGTCTTGAGAGAGCAGATAGCTGGTGGTCAAC
EST: CAATGGTGCGAGAGGATCTGGTGCAACTGTTAGGGTTTTCCAGCATAACT CCCCTGCTCATTTGGAAGAGGTCTTGAGAGAGCAGATAGCTGGTGGTCAACEST: gi|33100006|gb|CF059966.1|CF059966
genomic: CAATGGTGCGAGAGGATCTGGTGCAACTGTTAGGGTTTTCCAGCATAACTgtgagttatt ... aatcttacagCCCCTGCTCATTTGGAAGAGGTCTTGAGAGAGCAGATAGCTGGTGGTCAAC
EST: CAATGGTGCGAGAGGATCTGGTGCAACTGTTAGGGTTTTCCAGCATAACT CCCCTGCTCATTTGGAAGAGGTCTTGAGAGAGCAGATAGCTGGTGGTCAACEST: gi|87157040|gb|DY401829.1|DY401829
genomic: CAATGGTGCGAGAGGATCTGGTGCAACTGTTAGGGTTTTCCAGCATAACTgtgagttatt ... aatcttacagCCCCTGCTCATTTGGAAGAGGTCTTGAGAGAGCAGATAGCTGGTGGTCAAC
EST: CAATGGTGCGAGAGGATCTGGTGCAACTGTTAGGGTTTTCCAGCATAACT CCCCTGCTCATTTGGAAGAGGTCTTGAGAGAGCAGATAGCTGGTGGTCAACEST: gi|33102015|gb|CF061975.1|CF061975
genomic: CAATGGTGCGAGAGGATCTGGTGCAACTGTTAGGGTTTTCCAGCATAACTgtgagttatt ... aatcttacagCCCCTGCTCATTTGGAAGAGGTCTTGAGAGAGCAGATAGCTGGTGGTCAAC
EST: CAATGGTGCGAGAGGATCTGGTGCAACTGTTAGGGTTTTCCAGCATAACT CCCCTGCTCATTTGGAAGAGGTCTTGAGAGAGCAGATAGCTGGTGGTCAAC
genomic: CAATGGTGCGAGAGGATCTGGTGCAACTGTTAGGGTTTTCCAGCATAACTgtgagttatt ... aatcttacagCCCCTGCTCATTTGGAAGAGGTCTTGAGAGAGCAGATAGCTGGTGGTCAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGGGCTGATAATTAGTGACTCTCTGAATCATAACTCAATTGTCAATGGTGCGAGAGGATCTGGTGCAACTGTTAGGGTTTTCCAGCATAACTgtgagttattgtgcttccggcaatgcaaatcaatatttggtctctcttgttcatgacttaccatggcaaatgaaatcttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT