Sequence
atgc intronic sequence ATGC exonic sequenceGTGACCTCAATCTTATTGGACAGTTTGGTGTTGGCTTCTACTCTGTGTACTTGGTTGCTGACTATGTTGAAGTGGTCAGCAAGCACAATGATGATAAACAgtaagacattgctggctgtttttttgttcatttcttgatttacctatttacttgtgtcacattattgtggtgttgcactcttttag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G141931_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os06g50300.1 (Oryza sativa), 5'ss of exon 6
GTGACCTCAATCTTATTGGACAGTTTGGTGTTGGCTTCTACTCTGTGTACTTGGTTGCTGACTATGTTGAAGTGGTCAGCAAGCACAATGATGATAAACAgtaagacattgctg------gctgtttttttgttcatttcttgatttaccta-------tttacttgtgtcacat---------tattgtggtgttgcactcttttag------
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GTGACCTCAATCTCATTGGGCAATTCGGTGTTGGTTTCTATTCAGTATACTTGGTTGCTGACTATGTTGAAGTGATCAGCAAGCACAATGACGACAAACAgtaagacaccactgaaatacagcggctacatattgtgtttttggttcatcttcttttccttcactggcatgacaacctacttcatgttctgctgttgcactttttctctgatag
upper sequence: GRMZM2G141931_T02 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA14G40320.1 (Glycine max), 5'ss of exon 6
GTGACCTCAATCTTATTGGACAGTTTGGTGTTGGCTTCTACTCTGTGTACTTGGTTGCTGACTATGTTGAAGTGGTCAGCAAGCACAATGATGATAAACAgtaagacattgctggc-------tgtttttttgttcatttc---ttga---------tttacctatttacttgtgtcacattattgtggtgttgcactcttttag-------
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GAGATCTCAATCTGATTGGGCAGTTTGGAGTCGGCTTCTACTCTGTTTATCTTGTGGCCGACTATGTCGAAGTTATTAGCAAGAATAACGATGATAAGCAgtaagtccttttggacctgatgttgtttttgtaatcagttagtattgaaggaaaatttttgtttgttgacttgtaacccagctgcctaacttgaaacttatttggttttcag
upper sequence: GRMZM2G141931_T02 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA17G37820.1 (Glycine max), 5'ss of exon 6
-GTGACCTCAATCTTATTGGACAGTTTGGTGTTGGCTTCTACTCTGTGTACTTGGTTGCTGACTATGTTGAAGTGGTCAGCAAGCACAATGATGATAAACAgtaagacattgctggc-tgtttttttgttcatttcttgatttacctatttacttgtgtcacattattgtggtgttgcactcttttag
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GGAGATCTCAATCTGATTGGGCAGTTTGGAGTCGGCTTCTACTCTGTTTATCTCGTGGCTGACTATGTCGAAGTCATTAGCAAGAATAATGATGATAAACagtaagtctttttggacctgatatcgtttttgtttgttgacttgta-acccagctatctgacttgaaaattattcggttttca-----
upper sequence: GRMZM2G141931_T02 (Zea mays), 5'ss of exon 6
lower sequence: AT4G24190.2 (Arabidopsis thaliana), 5'ss of exon 6
GTGACCTCAATCTTATTGGACAGTTTGGTGTTGGCTTCTACTCTGTGTACTTGGTTGCTGACTATGTTGAAGTGGTCAGCAAGCACAATGATGATAAACAgtaagacattgctggctgtttt-tttgttcatttcttgatttacctatttacttgt-gtcacattattgtggtg-----ttgcactcttttag
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GGGATTTGAACCTTATTGGACAATTTGGAGTTGGATTCTACTCTGCCTATCTTGTTGCTGACTACATTGAAGTCATTAGCAAGCACAATGATGACAGCCAgtaagttgatttagagggctttgtttggcaatatacttgtgggcatgtaaaatcattgaaaagcttttctgataacttcttttccgttttcag
upper sequence: GRMZM2G141931_T02 (Zea mays), 5'ss of exon 6
lower sequence: Vv18s0001g14500.t01 (Vitis vinifera), 5'ss of exon 6
GTGACCTCAATCTTATTGGACAGTTTGGTGTTGGCTTCTACTCTGTGTACTTGGTTGCTGACTATGTTGAAGTGGTCAGCAAGCACAATGATGATAAACAgtaagaca-ttgctggctgtttttttgttcatttct-tgatttacctatttacttgtg--tcacattattgtggtgttg-----cactcttttag------------
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GGGATCTTAATCTCATTGGACAATTTGGAGTTGGGTTCTACTCTGTATATCTTGTTGCAGACTATGTTGAAGTCATTAGCAAACACAATGATGACAAACAgtgagcctcttgaagattttattttattttatttttattattattttttttttttgtgaaccagaggtttatgaaatggattgatgatcattcaaatttccattcag
upper sequence: GRMZM2G141931_T02 (Zea mays), 5'ss of exon 6
lower sequence: PP1S126_38V6.1 (Physcomitrella patens), 5'ss of exon 6
GTGACCTCAATCTTATTGGACAGTTTGGTGTTGGCTTCTACTCTGTGTACTTGGTTGCTGACTATGTTGAAGTGGTCAGCAAGCACAATGATGATAAACAgtaagacattgctggctgtttttttgtt--catttcttgatttacctatttacttgtgtca-cattattgtggtgttgcactcttttag------------
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GGGATCTCAACCTCATAGGTCAATTTGGAGTTGGTTTCTACTCTGTGTATTTGGTTGCTGATCACGTTGAAGTCATTAGCAAACACAACGATGACGTGCAgtgag-taccaactccgaacttttcgttgacgtgcctcaatttcgggaaatctctatgccaactctttcaatatttcgcagccgtttttctgtttctgcaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32849330|gb|CD989011.1|CD989011EST: TTGGTTGCTGACTATGTTGAAGTGGTCAGCAAGCACAATGATGATAAACA GTATGTGTGGGAATCAAAAGCTGATGGATCATTTGCCATCTCTGAGGATAC
genomic: TTGGTTGCTGACTATGTTGAAGTGGTCAGCAAGCACAATGATGATAAACAgtaagacatt ... actcttttagGTATGTGTGGGAATCAAAAGCTGATGGATCATTTGCCATCTCTGAGGATAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGACCTCAATCTTATTGGACAGTTTGGTGTTGGCTTCTACTCTGTGTACTTGGTTGCTGACTATGTTGAAGTGGTCAGCAAGCACAATGATGATAAACAgtaagacattgctggctgtttttttgttcatttcttgatttacctatttacttgtgtcacattattgtggtgttgcactcttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG