1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTTCAGTCTTTTTTGACGGCATTGAGAGCATTATCTCATAAAGACTTCCATTATGGTTCATATGCAACAAGTGAGCAGgtagctaacgtcacttcttcaacaaacacaaactgatgaaaaattctgagatatgcattctgcattagatccttcaacacacattttgtgttctgtgctcag
species | Zea mays |
transcript | GRMZM2G141216_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CATTATCTCATAAAGACTTCCATTATGGTTCATATGCAACAAGTGAGCAG GTAGTTGCTGCTGGAGACTTGTGTGCGATATGCCAAGAAAAGATGCATGTTEST: gi|37361112|gb|CF602401.1|CF602401
genomic: CATTATCTCATAAAGACTTCCATTATGGTTCATATGCAACAAGTGAGCAGgtagctaacg ... ctgtgctcagGTAGTTGCTGCTGGAGACTTGTGTGCGATATGCCAAGAAAAGATGCATGTT
EST: CATTATCTCATAAAGACTTCCATTATGGTTCATATGCAACAAGTGAGCAG GTAGTTGCTGCTGGAGACTTGTGTGCGATATGCCAAGAAAATATGCATGTTEST: gi|37378364|gb|CF625868.1|CF625868
genomic: CATTATCTCATAAAGACTTCCATTATGGTTCATATGCAACAAGTGAGCAGgtagctaacg ... ctgtgctcagGTAGTTGCTGCTGGAGACTTGTGTGCGATATGCCAAGAAAAGATGCATGTT
EST: TCATAAAGACTTCCCTTTATGGTTCATATGCAACAAGTGAGCAG GTAGTTGCTGCTGGAGACTAGTGTGCGATATGCCAAGAAAAGATGCATGTTEST: gi|211149831|gb|FL250219.1|FL250219
genomic: TCATAAAGACTT-CCATTATGGTTCATATGCAACAAGTGAGCAGgtagctaacg ... ctgtgctcagGTAGTTGCTGCTGGAGACTTGTGTGCGATATGCCAAGAAAAGATGCATGTT
EST: CATTATCTCATAAAGACTTCCATTATGGTTCATATGCAACAAGTGAGCAG GTAGTTGCTGCTGGAGACTTGTGTGCGGATATGCCAAGAAAAGATGCATGTEST: gi|40334853|gb|CK368923.1|CK368923
genomic: CATTATCTCATAAAGACTTCCATTATGGTTCATATGCAACAAGTGAGCAGgtagctaacg ... ctgtgctcagGTAGTTGCTGCTGGAGACTTGTGTGCG-ATATGCCAAGAAAAGATGCATGT
EST: ATCTCATAAAGACTTCCATTATGGTTCATATGCAACAAGTGAGCAG GTAGTTGCTGCTGGAGACTTGTGTGCGATATGCCAAGAAAAGATGCATGTTEST: gi|211105992|gb|FL446094.1|FL446094
genomic: ATCTCATAAAGACTTCCATTATGGTTCATATGCAACAAGTGAGCAGgtagctaacg ... ctgtgctcagGTAGTTGCTGCTGGAGACTTGTGTGCGATATGCCAAGAAAAGATGCATGTT
EST: CATTATCTCATAAAGACTTTCATTATGGTTCATATGCAACAAGTGAGCAG GTAGTTGCTGCTGGAGACTTGTGTGCGATATGCCAAGAAAAGATGCATGTTEST: gi|74237584|gb|DT645498.1|DT645498
genomic: CATTATCTCATAAAGACTTCCATTATGGTTCATATGCAACAAGTGAGCAGgtagctaacg ... ctgtgctcagGTAGTTGCTGCTGGAGACTTGTGTGCGATATGCCAAGAAAAGATGCATGTT
EST: CATTATCTCATAAAGACTTCCATTATGGTTCATATGCAACAAGTGAGCAG GTAGTTGCTGCTGGAGACTTGTGTGCGATATGCCAAGAAAAGATGCATGTT
genomic: CATTATCTCATAAAGACTTCCATTATGGTTCATATGCAACAAGTGAGCAGgtagctaacg ... ctgtgctcagGTAGTTGCTGCTGGAGACTTGTGTGCGATATGCCAAGAAAAGATGCATGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCAGTCTTTTTTGACGGCATTGAGAGCATTATCTCATAAAGACTTCCATTATGGTTCATATGCAACAAGTGAGCAGgtagctaacgtcacttcttcaacaaacacaaactgatgaaaaattctgagatatgcattctgcattagatccttcaacacacattttgtgttctgtgctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG