1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CACAAATGCTACATAGTTGCTACTTGTGATAGAGATTTGAAAAGGAGGATAAGAAAGgtatgtttggtgtttagtgctcatagctcaggacatgcttctaatatcgcaaaagctttttcatgcatgcttgtaccatgggcatttccccaatcttgcag
species | Zea mays |
transcript | GRMZM2G140689_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GCTACATAGTTGCTACTTGTGATAGAGATTTGAAAAGGAGGATAAGAAAG GTTCCTGGTGTTCCAATCATGTACATCACAAGACATAGGTATTCGATAGAAEST: gi|89252677|gb|DY624463.1|DY624463
genomic: GCTACATAGTTGCTACTTGTGATAGAGATTTGAAAAGGAGGATAAGAAAGgtatgtttgg ... aatcttgcagGTTCCTGGTGTTCCAATCATGTACATCACAAGACATAGGTATTCGATAGAA
EST: ATAGAGATTTGAAAAGGAGGATAAGAAAG GTTCGTGGTGTTCCAATCATGTACATCACAAGACATAGGTATTCGATAGAAEST: gi|19770099|gb|BQ034820.1|BQ034820
genomic: ATAGAGATTTGAAAAGGAGGATAAGAAAGgtatgtttgg ... aatcttgcagGTTCCTGGTGTTCCAATCATGTACATCACAAGACATAGGTATTCGATAGAA
EST: GCTACATAGTTGCTACTTGTGATAGAGATTTGAAAAGGAGGATAAGAAAG GTTCCTGGTGTTCCAATCATGTACATCACAAGACATAGGTATTCGATAGAAEST: gi|211091999|gb|FL476412.1|FL476412
genomic: GCTACATAGTTGCTACTTGTGATAGAGATTTGAAAAGGAGGATAAGAAAGgtatgtttgg ... aatcttgcagGTTCCTGGTGTTCCAATCATGTACATCACAAGACATAGGTATTCGATAGAA
EST: GCTACATAGTTGCTACTTGTGATAGAGATTTGAAAAGGAGGATAAGAAAG GTTCCTGGTGTTCCAATCATGTACATCACAAGACATAGGTATTCGATAGAAEST: gi|19436894|gb|BM953304.1|BM953304
genomic: GCTACATAGTTGCTACTTGTGATAGAGATTTGAAAAGGAGGATAAGAAAGgtatgtttgg ... aatcttgcagGTTCCTGGTGTTCCAATCATGTACATCACAAGACATAGGTATTCGATAGAA
EST: GCTACATAGTTGCTACTTGTGATAGAGATTTGAAAAGGAGGATAAGAAAG GTTCCTGGTGTTCCAATCATGTACATCACAAGACATAGGTATTCGATAGAAEST: gi|37383195|gb|CF628588.1|CF628588
genomic: GCTACATAGTTGCTACTTGTGATAGAGATTTGAAAAGGAGGATAAGAAAGgtatgtttgg ... aatcttgcagGTTCCTGGTGTTCCAATCATGTACATCACAAGACATAGGTATTCGATAGAA
EST: GCTACATAGTTGCTACTTGTGATAGAGATTTGAAAAGGAGGATAAGAAAG GTTCCTGGTGTTCCAATCATGTACATCACAAGACATAGGTATTCGATAGAAEST: gi|166471289|gb|EG109651.1|EG109651
genomic: GCTACATAGTTGCTACTTGTGATAGAGATTTGAAAAGGAGGATAAGAAAGgtatgtttgg ... aatcttgcagGTTCCTGGTGTTCCAATCATGTACATCACAAGACATAGGTATTCGATAGAA
EST: CTTACATAGTTGCTACTTGTGATAGAGATTTGAAAAGGAGGATAAGAAAG GTTCCTGGTGTTCCAATCATGTACATCACAAGAEST: gi|19057702|gb|BM736369.1|BM736369
genomic: C-TACATAGTTGCTACTTGTGATAGAGATTTGAAAAGGAGGATAAGAAAGgtatgtttgg ... aatcttgcagGTTCCTGGTGTTCCAATCATGTACATCACAAGA
EST: GCTACATAGTTGCTACTTGTGATAGAGATTTGAAAAGGAGGATAAGAAAG GTTCCTGGTGTTCCAATCATGTACATCACAAGACATAGGTATTCGATAGAAEST: gi|78083854|gb|DV512247.1|DV512247
genomic: GCTACATAGTTGCTACTTGTGATAGAGATTTGAAAAGGAGGATAAGAAAGgtatgtttgg ... aatcttgcagGTTCCTGGTGTTCCAATCATGTACATCACAAGACATAGGTATTCGATAGAA
EST: GCTACATAGTTGCTACTTGTGATAGAGATTTGAAAAGGAGGATAAGAAAG GTTCCTGGTGTTCCAATCATGTACATCACAAGACATAGGTATTCGATAGAAEST: gi|19436893|gb|BM953303.1|BM953303
genomic: GCTACATAGTTGCTACTTGTGATAGAGATTTGAAAAGGAGGATAAGAAAGgtatgtttgg ... aatcttgcagGTTCCTGGTGTTCCAATCATGTACATCACAAGACATAGGTATTCGATAGAA
EST: GCTACATAGTTGCTACTTGTGATAGAGATTTGAAAAGGAGGATAAGAAAG GTTCCTGGNGTTCCAATCATGTACATCACAAGACATAGGTATTCGATAGAAEST: gi|50330326|gb|CO525452.1|CO525452
genomic: GCTACATAGTTGCTACTTGTGATAGAGATTTGAAAAGGAGGATAAGAAAGgtatgtttgg ... aatcttgcagGTTCCTGGTGTTCCAATCATGTACATCACAAGACATAGGTATTCGATAGAA
EST: TGTGATAGAGATTTGAAAAGGAGGATAAGAAAG GTTCCTGGTGTTCCAATCATGTACATCACAAGACATAGGTATTCGATAGAAEST: gi|5649962|gb|AI920322.1|AI920322
genomic: TGTGATAGAGATTTGAAAAGGAGGATAAGAAAGgtatgtttgg ... aatcttgcagGTTCCTGGTGTTCCAATCATGTACATCACAAGACATAGGTATTCGATAGAA
EST: GCTACATAGTTGCTACTTGTGATAGAGATTTGAAAAGGAGGATAAGAAAG GTTCCTGGTGTTCCAATCATGTACATCACAAGACATAGGTATTCGATAGAAEST: gi|19057549|gb|BM736231.1|BM736231
genomic: GCTACATAGTTGCTACTTGTGATAGAGATTTGAAAAGGAGGATAAGAAAGgtatgtttgg ... aatcttgcagGTTCCTGGTGTTCCAATCATGTACATCACAAGACATAGGTATTCGATAGAA
EST: GCTACATAGTTGCTACTTGTGATAGAGATTTGAAAAGGAGGATAAGAAAG GTTCCTGGTGTTCCAATCATGTACATCACAAGACATAGGTATTCGATAGAA
genomic: GCTACATAGTTGCTACTTGTGATAGAGATTTGAAAAGGAGGATAAGAAAGgtatgtttgg ... aatcttgcagGTTCCTGGTGTTCCAATCATGTACATCACAAGACATAGGTATTCGATAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACAAATGCTACATAGTTGCTACTTGTGATAGAGATTTGAAAAGGAGGATAAGAAAGgtatgtttggtgtttagtgctcatagctcaggacatgcttctaatatcgcaaaagctttttcatgcatgcttgtaccatgggcatttccccaatcttgcag
- - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA