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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTTGTTTTTGATCTTCACAAGAATTATAGGAACATCCACCAAAAGATCTATGTTCGAATATCGAACCTTCCTGTCTATGATCAAATACGCAATATCAGgtaaatggcacagtttactttgtatcctttagcttcatgatcaatttgatttggtctaatgtcctacatgcctttgttcag

Basic information

species Zea mays
transcript GRMZM2G139894_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G139894_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os11g29380.1 (Oryza sativa), 5'ss of exon 6
ATGTTGTTTTTGATCTTCACAAGAATTATAGGAACATCCACCAAAAGATCTATGTTCGAATATCGAACCTTCCTGTCTATGATCAAATACGCAATATCAGgtaaatggcacagtttactttgtat--cctttagcttcatgatcaatt--tgatttggtctaatgtcctacatgcctttgttcag
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ATGTTGTTTTTGATCTCCATAAGAACTATAGGAACATTCATCAAAAAATCTATGTCCGAATAACCAATCTTCCTGTCTACGACCAAATACGCAATATCAGgtcagta-catgctttctttagtatggtatttagaagtcaaattgattgattgtctgtgcttatatgctacttgccaaatttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87157547|gb|DY402336.1|DY402336
EST:     TATGTTCGAATATCGAACCTTCCTGTCTATGATCAAATACGCAATATCAG                         GCAAATCCATCTGAACACAATGATTCGAATTGGTGGTGTTGTTACCCGACG
genomic: TATGTTCGAATATCGAACCTTCCTGTCTATGATCAAATACGCAATATCAGgtaaatggca ... ctttgttcagGCAAATCCATCTGAACACAATGATTCGAATTGGTGGTGTTGTTACCCGACG
EST: gi|22936028|gb|BU572303.1|BU572303
EST:     TATGTTCGAATATCGAACCTTCCTGTCTATGATCAAATACGCAATATCAG                         GCAAATCCATCTGAACACAATGATTCGAATTGGTGGTGTTGTTACCCGACG
genomic: TATGTTCGAATATCGAACCTTCCTGTCTATGATCAAATACGCAATATCAGgtaaatggca ... ctttgttcagGCAAATCCATCTGAACACAATGATTCGAATTGGTGGTGTTGTTACCCGACG
EST: gi|21432118|gb|BQ547608.1|BQ547608
EST:     TATGTTCGAATATCGAACCTTCCTGTCTATGATCAAATACGCAATATCAG                         GCAAATCCATCTGAACACAATGATTCGAATTGGTGGTGTTGTTACCCGACG
genomic: TATGTTCGAATATCGAACCTTCCTGTCTATGATCAAATACGCAATATCAGgtaaatggca ... ctttgttcagGCAAATCCATCTGAACACAATGATTCGAATTGGTGGTGTTGTTACCCGACG