1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGGGCGTTCTAGAGGGTTTGGTTTTATCACATTTGAAAGTGAAGATTCTGTTGAAAGGGTCATATCAGAGGGGAGAATGCGTGATCTTGGTGGGAAGCAGgttagatttttaaatttgttttgttgtagacttatgtttcacttaaaagcgaagttgaacaaaaaactaaaagacttggaaatgttcataattcatgcgc...
species | Zea mays |
transcript | GRMZM2G139643_T04 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TNGAA-GGGTCATATCAGAGGGGAGAATGCGTGATCTTGGTGGGAAGCAG GTTGAAATAAAGAAAGCTGAACCAAAGAAACATGGATCTGAEST: gi|30088355|gb|CB886560.1|CB886560
genomic: T-GAAAGGGTCATATCAGAGGGGAGAATGCGTGATCTTGGTGGGAAGCAGgttagatttt ... ctgtttgcagGTTGAAATAAAGAAGGCTGAACCAAAGAAACATGGATCTGA
EST: TTGAAAGGGTCATATCAGAGGGGAGAATGCGTGATCTTGGTGGGAAGCAG GTTGAAATAAAGAAGGCTGAACCAAAGAAACATGGATCTGACCACAGCAGTEST: gi|22542506|gb|BU092944.1|BU092944
genomic: TTGAAAGGGTCATATCAGAGGGGAGAATGCGTGATCTTGGTGGGAAGCAGgttagatttt ... ctgtttgcagGTTGAAATAAAGAAGGCTGAACCAAAGAAACATGGATCTGACCACAGCAGT
EST: GGGGAGAATGCTGTGATCTTGGTGGGAAGCAG GTTGAAATAAAGAAGGCTGATCCAAAGAAACATGGATCTGACCACAGCAGTEST: gi|76282448|gb|DV022016.1|DV022016
genomic: GGGGAGAATGC-GTGATCTTGGTGGGAAGCAGgttagatttt ... ctgtttgcagGTTGAAATAAAGAAGGCTGAACCAAAGAAACATGGATCTGACCACAGCAGT
EST: TTGAAAGGGTCATATCAGAGGGGAGAATGCGTGATCTTGGTGGGAAGCAG GTTGAAATAAAGAAGGCTGAACCAAAGAAACATGGATCTGACCACAGCAGTEST: gi|71768840|gb|DR966777.1|DR966777
genomic: TTGAAAGGGTCATATCAGAGGGGAGAATGCGTGATCTTGGTGGGAAGCAGgttagatttt ... ctgtttgcagGTTGAAATAAAGAAGGCTGAACCAAAGAAACATGGATCTGACCACAGCAGT
EST: TTGAAAGGGTCATATCAGAGGGGAGAATGCGTGATCTTGGTGGGAAGCAG GTTGAAATAAAGAAGGCTGAACCAAAGAAACATGGATCTGACCEST: gi|71446122|gb|DR827172.1|DR827172
genomic: TTGAAAGGGTCATATCAGAGGGGAGAATGCGTGATCTTGGTGGGAAGCAGgttagatttt ... ctgtttgcagGTTGAAATAAAGAAGGCTGAACCAAAGAAACATGGATCTGACC
EST: TTGAAAGGGTCATATCAGAGGGGAGAATGCGTGATCTTGGTGGGAAGCAG GTTGAAATAAAGAAGGCTGAACCAAAGAAACATGGATCTGACCACAGCAGT
genomic: TTGAAAGGGTCATATCAGAGGGGAGAATGCGTGATCTTGGTGGGAAGCAGgttagatttt ... ctgtttgcagGTTGAAATAAAGAAGGCTGAACCAAAGAAACATGGATCTGACCACAGCAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGGCGTTCTAGAGGGTTTGGTTTTATCACATTTGAAAGTGAAGATTCTGTTGAAAGGGTCATATCAGAGGGGAGAATGCGTGATCTTGGTGGGAAGCAGgttagatttttaaatttgttttgttgtagacttatgtttcacttaaaagcgaagttgaacaaaaaactaaaagacttggaaatgttcataattcatgcgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG