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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTATTGGCTTGGTCAAATTAATGGGAAGAAGCAGCGGGTTTATTGCAATGCACGCTTCCCTTTCAAGTGGGCAGGTCGATGTCTGCTTAATACCTGAGgtaatataaatgtagcttttactatgtttaaaactgccatatgttttcctctcacatgtaagcactaacagaagcttacaagttacaatatgaatgaag

Basic information

species Zea mays
transcript GRMZM2G139360_T06
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G139360_T06 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os08g34050.1 (Oryza sativa), 5'ss of exon 9
TGGTATTGGCTTGGTCAAATTAATGGGAAGAAGCAGCGGGTTTATTGCAATGCACGCTTCCCTTTCAAGTGGGCAGGTCGATGTCTGCTTAATACCTGAGgtaatataaatgtagc-ttttactatgtttaaaactgccatatgttttcctctcacatgtaagc-actaacagaagcttacaagttacaatatgaatgaag
||| ||||| |||||||||||||||||||||||||| || || ||||||||||| ||||||||||||||||||||||| |||||||| |||||||| |||||  | ||||  |  |  | || ||||||| | ||| |||       | |||| |  |   | | ||  | | ||||||||       |||||||||||||
TGGCATTGGTTTGGTCAAATTAATGGGAAGAAGCAGTGGCTTCATTGCAATGCATGCTTCCCTTTCAAGTGGGCAGGTTGATGTCTGTTTAATACCAGAGgtg-tgtaaacattacactgtattatgtttgagactaccaa------ttctcttatgtacgatctaccgataaaagcttac------taatatgaatgaag

upper sequence: GRMZM2G139360_T06 (Zea mays), 5'ss of exon 6
lower sequence: Vv14s0108g00540.t01 (Vitis vinifera), 5'ss of exon 10
TGGTATTGGCTTGGTCAAATTAATGGGAAGAAGCAGCGGGTTTATTGCAATGCACGCTTCCCTTTCAAGTGGGCAGGTCGATGTCTGCTTAATACCTGAGgtaatataaatgtagcttttactatgtttaaaactgccatatgttttcctctcacatgtaagcactaacagaagcttacaagttacaatatgaatgaag
||| || ||  | || ||| | ||||||||||||||||| ||||| |||||||||||||| |||||||| || ||| | ||| |||| || || || |||||  | || |   |      |  ||| ||    ||  |  |  |       | |    |       ||   |    || | | | |||| | |      
TGGCATCGGGCTTGTAAAACTGATGGGAAGAAGCAGCGGCTTTATAGCAATGCACGCTTCGCTTTCAAGCGGTCAGATTGATATCTGTTTGATTCCAGAGgtg-tgtagaatcaagaagaatgatgcttt---ctttctcaaatccattaataatcattgtctgggaatctatttctaaaggcttcaatttcag-----

upper sequence: GRMZM2G139360_T06 (Zea mays), 5'ss of exon 6
lower sequence: PP1S94_106V6.1 (Physcomitrella patens), 5'ss of exon 9
TGGTATTGGCTTGGTCAAATTAATGGGAAGAAGCAGCGGGTTTATTGCAATGCACGCTTCCCTTTCAAGTGGGCAGGTCGATGTCTGCTTAATACCTGAGgtaatata-------aatgtagcttttactatgtttaaaac--tgccatatgttttcctctcacatgtaagcactaaca-gaagcttacaagttacaatatgaatgaag
|||  ||||| | || || || ||||||||    || || |||||||| |||||||| ||  |  ||||||| ||||||||||||||||| ||||||||||||  ||        ||| | | || |    | ||| || |  | |  ||   |||| | |  | || ||    | ||  |  |  | |    |   |||         
TGGCGTTGGCATCGTTAAGTTGATGGGAAGGCAGAGTGGATTTATTGCCATGCACGCGTCTTTGGCAAGTGGTCAGGTCGATGTCTGCTTGATACCTGAGgtagaattcctgtccaatatcgattctgtgctcttttaagcatttcactacaatttcttgttccttg-aacagttgacgtggtggcttcctactgtgataa--------